TCONS_00044472 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044472
Unique NameTCONS_00044472
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044472 ID=TCONS_00044472|Name=TCONS_00044472|organism=Clytia hemisphaerica|type=transcript|length=286bp
GTTTTCATTCTTATAGTGTTCCTCTTATCATGCATATTCAAATGCTTCAA
CAGTATGTTCCTATGTGAAGAATTTGCCAAACTGCCAATATGATGGTGGA
TTTATAGATTACATTGGATTAACAATGTGCTCTTTTTCAGAGAAAAATAG
AGCATGGTGTTATGTTTtactgTTACTCTGGATGTTGTACATGTTTATAA
GTCTTGGGGTAACAGCTGAAGATTTtttttgtccATCTTTGAAGGCCATA
TCAAAATTCCTAAGAATGAGTGATAGTTTAGCTGTA
Run BLAST on NCBI

transcript from alignment at sc0005632:22..809-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044472 ID=TCONS_00044472|Name=TCONS_00044472|organism=Clytia hemisphaerica|type=transcript|length=788bp|location=Sequence derived from alignment at sc0005632:22..809- (Clytia hemisphaerica)
GTTTTCATTCTTATAGTGTTCCTCTTATCATGCATATTCAAATGCTTCAA
CAGTATGTTCCTATGTGAAGAATTTGCCAAACTGCCAATATGATGGTGGA
TTTATAGATTACATTGGATTAACAATGTGCTCTTTTTCAGAGAAAAATAG
AGCATGGTGTTATGTTTTACTGGTAATTTTTTTTTTCTGAATTGGAATCT
TTTCCCATTAGGCCTCAGACAATATATAAAAATGAATCTCTTTTGGTTAA
TGATAATGATAAAGAAACAATGACAGTAACTAAGGAATAGTTTTGCCAAC
TAAACAACACCCAAAACCTGGAGGTTTATAATTTATGATAGATTCAAAAT
AGGATTGGAATCAAGTTTTTTTTCTGTGTAACTAGTCATAGTTAATTACG
ATATGACCTTCAGTCACAGTTGTCTCGTTTATGGTGCTATAATAATTCTT
GTTAGTGCACCTTATCATTGTGTCCTATCATTTGATTTCAGTTACTCTGG
ATGTTGTACATGTTTATAAGTCTTGGGGTAACAGCTGAAGATTTGTAAGT
TTTCTTTATTGAATACCAATTGTGAGCCAATTGAGCAATTTTTGAAAACT
AAATTTGTCATTGAAAAATCTAGACACTATTTATTATAGAAAAACTTTCC
ATCTAAAACGAATGATCAGCACTGGCATAATTCCATAATGATGGAATAGT
GATGGTCTTTTCATTCTTCTTTTTCAGTTTTTGTCCATCTTTGAAGGCCA
TATCAAAATTCCTAAGAATGAGTGATAGTTTAGCTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028103XLOC_028103Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044472-exon-sc0005632-1575043694:638..809TCONS_00044472-exon-sc0005632-1575043694:638..809Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1575043694:266..318TCONS_00044472-exon-sc0005632-1575043694:266..318Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1575043694:22..82TCONS_00044472-exon-sc0005632-1575043694:22..82Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1510915933:638..809TCONS_00044472-exon-sc0005632-1510915933:638..809Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1510915933:266..318TCONS_00044472-exon-sc0005632-1510915933:266..318Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1510915933:22..82TCONS_00044472-exon-sc0005632-1510915933:22..82Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1491911889:638..809TCONS_00044472-exon-sc0005632-1491911889:638..809Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1491911889:266..318TCONS_00044472-exon-sc0005632-1491911889:266..318Clytia hemisphaericaexon
TCONS_00044472-exon-sc0005632-1491911889:22..82TCONS_00044472-exon-sc0005632-1491911889:22..82Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005632supercontigsc0005632:22..809 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.66383	4.46602	6.74111	2.53659	19.1459	15.6174	24.141	22.0493	7.33267	7.17055	12.5278	4.27016	2.74129	5.37739	7.54161	12.5586	6.18846	10.2192	4.38158	7.13223	11.5128	13.6069	13.1277	12.8898	8.85081	23.6974	18.2114	18.7655	30.4993	28.4844
Blast
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BLAST of TCONS_00044472 vs. Swiss-Prot (Human)
Match: NCLX (Mitochondrial sodium/calcium exchanger protein OS=Homo sapiens GN=SLC8B1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.100e-16
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 2 
Query:   41 NASTVCSYVKNLPNCQYDGGFIDYIGLTMCSFSEKNRAWCYVLLLLWMLYMFISLGVTAEDFFCPSLKAISKFLRMSDSLA 283
            N S  C +++  P+C  DGG++DY+    C F          L + W+LY+F+ LGVTA  FFCP+L AIS  L++S ++A
Sbjct:   60 NVSDRCDFIRTNPDCHSDGGYLDYLEGIFCHFPPSLLPLAVTLYVSWLLYLFLILGVTAAKFFCPNLSAISTTLKLSHNVA 140
The following BLAST results are available for this feature:
BLAST of TCONS_00044472 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCLX3.100e-1640.74Mitochondrial sodium/calcium exchanger protein OS=... [more]
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