TCONS_00044473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044473
Unique NameTCONS_00044473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044473 ID=TCONS_00044473|Name=TCONS_00044473|organism=Clytia hemisphaerica|type=transcript|length=786bp
TTATGTACAAAAGTATCAACAGCACTTTGTTTATTTCTCGTCAATAGTGC
TCTTTTGAggttatttttcttcaaaaagtaaaataacTTGTGCAAATTTG
GTTGCAATTTCAAAAGTCTATCACCCTCATCTTCGAAGTCTTCTACAACT
TGTTTACGTCTTTGCTTTTCTTCCTTTGTAGGTGCATTTTCTACATGCTC
CAAAATGTCAATACTCTTATCAAGAATTCCTAATTTCTCACGGAGGAGTT
TGAAGTTGATGACAGGTATGGTAAGTGTACCGTCCATATCAAAAATTATT
CCTTGgatattgatttgttttttaagtattttttggCCACAAGAACTTGC
ATAAAGTTTTCGATAAAACAAACtcattttgatatttattttttatttga
aggaGGGCAAGTTACAGATATCAACTATACAAACTACCCTTGTCCCTTTA
ACGTTAAAACGTTGCAAGTTTGTCTCTTGCATCTGCTGCAAGCAAATAAA
CTCTACTGCACTTTTCGAAGTTGTTTACAAATTTGGCTACCATTTTTAAA
AGCTGTCCCTTTAAAAATGGTACCCgcagaaaacgaaagtgaaagtttgt
ttcccgcgaaattttttctTGTGAAATCTCAGATataagtttcttttttc
aaggtttttaagtCTGGTTAATGGGCTTGTGAGTAAATTTACAGTGTATT
TCCCAATCCCTTTGGTGAATTTCTAATATCAAGATGACTTCTGATATTGT
TGTAATAGGGTCTTGCAATGTGGATTTGATCAGGTG
Run BLAST on NCBI

protein sequence of TCONS_00044473-protein

>TCONS_00044473-protein ID=TCONS_00044473-protein|Name=TCONS_00044473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MSLFYRKLYASSCGQKILKKQINIQGIIFDMDGTLTIPVINFKLLREKLG
ILDKSIDILEHVENAPTKEEKQRRKQVVEDFEDEGDRLLKLQPNLHKLFY
FLKKNNLKRALLTRNKQSAVDTFVH
Run BLAST on NCBI

transcript from alignment at sc0005632:3351..4136

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044473 ID=TCONS_00044473|Name=TCONS_00044473|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0005632:3351..4136 (Clytia hemisphaerica)
CACCTGATCAAATCCACATTGCAAGACCCTATTACAACAATATCAGAAGT
CATCTTGATATTAGAAATTCACCAAAGGGATTGGGAAATACACTGTAAAT
TTACTCACAAGCCCATTAACCAGacttaaaaaccttgaaaaaagaaactt
atATCTGAGATTTCACAagaaaaaatttcgcgggaaacaaactttcactt
tcgttttctgcGGGTACCATTTTTAAAGGGACAGCTTTTAAAAATGGTAG
CCAAATTTGTAAACAACTTCGAAAAGTGCAGTAGAGTTTATTTGCTTGCA
GCAGATGCAAGAGACAAACTTGCAACGTTTTAACGTTAAAGGGACAAGGG
TAGTTTGTATAGTTGATATCTGTAACTTGCCCtccttcaaataaaaaata
aatatcaaaatgaGTTTGTTTTATCGAAAACTTTATGCAAGTTCTTGTGG
ccaaaaaatacttaaaaaacaaatcaatatcCAAGGAATAATTTTTGATA
TGGACGGTACACTTACCATACCTGTCATCAACTTCAAACTCCTCCGTGAG
AAATTAGGAATTCTTGATAAGAGTATTGACATTTTGGAGCATGTAGAAAA
TGCACCTACAAAGGAAGAAAAGCAAAGACGTAAACAAGTTGTAGAAGACT
TCGAAGATGAGGGTGATAGACTTTTGAAATTGCAACCAAATTTGCACAAg
ttattttactttttgaagaaaaataaccTCAAAAGAGCACTATTGACGAG
AAATAAACAAAGTGCTGTTGATACTTTTGTACATAA

Coding sequence (CDS) from alignment at sc0005632:3351..4136

>TCONS_00044473 ID=TCONS_00044473|Name=TCONS_00044473|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at sc0005632:3351..4136 (Clytia hemisphaerica)
atgaGTTTGTTTTATCGAAAACTTTATGCAAGTTCTTGTGGccaaaaaat
acttaaaaaacaaatcaatatcCAAGGAATAATTTTTGATATGGACGGTA
CACTTACCATACCTGTCATCAACTTCAAACTCCTCCGTGAGAAATTAGGA
ATTCTTGATAAGAGTATTGACATTTTGGAGCATGTAGAAAATGCACCTAC
AAAGGAAGAAAAGCAAAGACGTAAACAAGTTGTAGAAGACTTCGAAGATG
AGGGTGATAGACTTTTGAAATTGCAACCAAATTTGCACAAgttattttac
tttttgaagaaaaataaccTCAAAAGAGCACTATTGACGAGAAATAAACA
AAGTGCTGTTGATACTTTTGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028104XLOC_028104Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044473-proteinTCONS_00044473-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044473-exon-sc0005632-1491911889:3351..4136TCONS_00044473-exon-sc0005632-1491911889:3351..4136Clytia hemisphaericaexon
TCONS_00044473-exon-sc0005632-1510915933:3351..4136TCONS_00044473-exon-sc0005632-1510915933:3351..4136Clytia hemisphaericaexon
TCONS_00044473-exon-sc0005632-1575043694:3351..4136TCONS_00044473-exon-sc0005632-1575043694:3351..4136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005632supercontigsc0005632:3351..4136 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.570979	0.440605	0.878785	0.747755	0.663344	0.327615	2.40545	2.72264	3.76955	1.83476	3.78079	1.36937	2.43955	1.39835	3.13935	2.27796	7.6469	9.14	1.66873	1.63385	4.76815	3.90516	2.5275	3.22895	4.52057	4.72348	2.26021	1.31374	1.35099	1.32714
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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