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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044479 ID=TCONS_00044479|Name=TCONS_00044479|organism=Clytia hemisphaerica|type=transcript|length=959bp
gaaaaattacatgGTAACCCCGTACAATAAAAGCGGTAATTCCACTCAAA
GAAGGAAGGAAGGAAGTGAATATCATCATGTTTCCTGTCCTCATCAGCTT
GGTATTGGTTATCTCCAATCATGGTTGCGTCACTCCTATTGAAACGTTCA
TCAGTACGATTACTGCGACAGCGCCACCATCGACGATTAAATATGCTAAA
TCGAGAACCAACTACTACTCGAACTCAACTGCCACTTTTAGTATTGTCCT
AAGTGGTGATATCGAAACGAACCCTGGACCAACAGCTCCTAATAACAAAC
CAAAATGTACGGTTTGCTCTAAAACTGTCGGAACGAACCGTAAACGATTC
GAATGTGAAATCTGCTTCTCAATGACCCATATTACTTGCTCCGAAATATC
AAAAGCTCAGCAGAAACATTACAATGCTATCAAACCTTATTCGTGGATAT
GCTCAAATTGTTTCTGTAGTGAACTACCCTTTTACAAAGAAAGGGAACTT
CCCATACACAAAGTAATGAACCCAAACCCTGTGCAAGATATTATCGATCC
TCACATTGAAGTtcttcaaaatcacaaaaaccgCATCTCTATTGGTCACC
TGAACACCCAATCACTTCTACCCAGTCTTGGAGAATTCTCAATTGTCGTC
AATAAATATAACTTAGATATCTATACCATTAGTGAATCGTGGttacaaaa
caatgaaaaacaaatAAGCCTTGCCGAACTGGAGGGTTACAAACTTTTCT
ACAAAAACCGTGTCGGAAAACGTGGAGGTGGTGTAGCCATTTATGTCAAA
GATACGATTACTCGTCACGAACGTAAAGATATTACCAAAAACCATAAAGA
CCTTGAGGTAGTTATTGTCGAGgctaaaggcaaaaataaaaacaattcgt
ATTTGATCGTAACTGTGTATCAGCCAAGTTCCAAAGAAGAAGATAAGTTA
TTATGGCTT Run BLAST on NCBI protein sequence of TCONS_00044479-protein >TCONS_00044479-protein ID=TCONS_00044479-protein|Name=TCONS_00044479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MFPVLISLVLVISNHGCVTPIETFISTITATAPPSTIKYAKSRTNYYSNS
TATFSIVLSGDIETNPGPTAPNNKPKCTVCSKTVGTNRKRFECEICFSMT
HITCSEISKAQQKHYNAIKPYSWICSNCFCSELPFYKERELPIHKVMNPN
PVQDIIDPHIEVLQNHKNRISIGHLNTQSLLPSLGEFSIVVNKYNLDIYT
ISESWLQNNEKQISLAELEGYKLFYKNRVGKRGGGVAIYVKDTITRHERK
DITKNHKDLEVVIVEAKGKNKNNSYLIVTVYQPSSKEEDKLLWL Run BLAST on NCBI transcript from alignment at sc0005640:2798..3756 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044479 ID=TCONS_00044479|Name=TCONS_00044479|organism=Clytia hemisphaerica|type=transcript|length=959bp|location=Sequence derived from alignment at sc0005640:2798..3756 (Clytia hemisphaerica)
AAGCCATAATAACTTATCTTCTTCTTTGGAACTTGGCTGATACACAGTTA
CGATCAAATacgaattgtttttatttttgcctttagcCTCGACAATAACT
ACCTCAAGGTCTTTATGGTTTTTGGTAATATCTTTACGTTCGTGACGAGT
AATCGTATCTTTGACATAAATGGCTACACCACCTCCACGTTTTCCGACAC
GGTTTTTGTAGAAAAGTTTGTAACCCTCCAGTTCGGCAAGGCTTatttgt
ttttcattgttttgtaaCCACGATTCACTAATGGTATAGATATCTAAGTT
ATATTTATTGACGACAATTGAGAATTCTCCAAGACTGGGTAGAAGTGATT
GGGTGTTCAGGTGACCAATAGAGATGcggtttttgtgattttgaagaACT
TCAATGTGAGGATCGATAATATCTTGCACAGGGTTTGGGTTCATTACTTT
GTGTATGGGAAGTTCCCTTTCTTTGTAAAAGGGTAGTTCACTACAGAAAC
AATTTGAGCATATCCACGAATAAGGTTTGATAGCATTGTAATGTTTCTGC
TGAGCTTTTGATATTTCGGAGCAAGTAATATGGGTCATTGAGAAGCAGAT
TTCACATTCGAATCGTTTACGGTTCGTTCCGACAGTTTTAGAGCAAACCG
TACATTTTGGTTTGTTATTAGGAGCTGTTGGTCCAGGGTTCGTTTCGATA
TCACCACTTAGGACAATACTAAAAGTGGCAGTTGAGTTCGAGTAGTAGTT
GGTTCTCGATTTAGCATATTTAATCGTCGATGGTGGCGCTGTCGCAGTAA
TCGTACTGATGAACGTTTCAATAGGAGTGACGCAACCATGATTGGAGATA
ACCAATACCAAGCTGATGAGGACAGGAAACATGATGATATTCACTTCCTT
CCTTCCTTCTTTGAGTGGAATTACCGCTTTTATTGTACGGGGTTACcatg
taatttttc Coding sequence (CDS) from alignment at sc0005640:2798..3756 >TCONS_00044479 ID=TCONS_00044479|Name=TCONS_00044479|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at sc0005640:2798..3756 (Clytia hemisphaerica)
AAGCCATAATAACTTATCTTCTTCTTTGGAACTTGGCTGATACACAGTTA
CGATCAAATacgaattgtttttatttttgcctttagcCTCGACAATAACT
ACCTCAAGGTCTTTATGGTTTTTGGTAATATCTTTACGTTCGTGACGAGT
AATCGTATCTTTGACATAAATGGCTACACCACCTCCACGTTTTCCGACAC
GGTTTTTGTAGAAAAGTTTGTAACCCTCCAGTTCGGCAAGGCTTatttgt
ttttcattgttttgtaaCCACGATTCACTAATGGTATAGATATCTAAGTT
ATATTTATTGACGACAATTGAGAATTCTCCAAGACTGGGTAGAAGTGATT
GGGTGTTCAGGTGACCAATAGAGATGcggtttttgtgattttgaagaACT
TCAATGTGAGGATCGATAATATCTTGCACAGGGTTTGGGTTCATTACTTT
GTGTATGGGAAGTTCCCTTTCTTTGTAAAAGGGTAGTTCACTACAGAAAC
AATTTGAGCATATCCACGAATAAGGTTTGATAGCATTGTAATGTTTCTGC
TGAGCTTTTGATATTTCGGAGCAAGTAATATGGGTCATTGAGAAGCAGAT
TTCACATTCGAATCGTTTACGGTTCGTTCCGACAGTTTTAGAGCAAACCG
TACATTTTGGTTTGTTATTAGGAGCTGTTGGTCCAGGGTTCGTTTCGATA
TCACCACTTAGGACAATACTAAAAGTGGCAGTTGAGTTCGAGTAGTAGTT
GGTTCTCGATTTAGCATATTTAATCGTCGATGGTGGCGCTGTCGCAGTAA
TCGTACTGATGAACGTTTCAATAGGAGTGACGCAACCATGATTGGAGATA
ACCAATACCAAGCTGATGAGGACAGGAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044479-exon-sc0005640-1491911889:2798..3756 | TCONS_00044479-exon-sc0005640-1491911889:2798..3756 | Clytia hemisphaerica | exon |
| TCONS_00044479-exon-sc0005640-1510915933:2798..3756 | TCONS_00044479-exon-sc0005640-1510915933:2798..3756 | Clytia hemisphaerica | exon |
| TCONS_00044479-exon-sc0005640-1575043694:2798..3756 | TCONS_00044479-exon-sc0005640-1575043694:2798..3756 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005640 | supercontig | sc0005640:2798..3756 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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