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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044481 ID=TCONS_00044481|Name=TCONS_00044481|organism=Clytia hemisphaerica|type=transcript|length=2240bp
ATGGTGTGTTGTATACCAGTAAAGATGTATATAGCCAAAGTTTTCAGGAC
AGTCCGGGGGTTGATGGTGTTTCAAGGGATTTGGGTGCATCTGAGGGAAT
GATGGGATCTTGGGTATCTTGTAATTTCAACCCATGGACAGCCCCCATAA
ATTTCCTTTGCGAACCAGGGGTTGCTATAGGCTAGATCACGTTCCGGGTG
ATTCGGGGTTATCAAGGGGTAACTGGGGGGTTATCAAGGGGTAACTGGGG
GGTTCCAGGAGATCTTCAGTCCAGTCCAGATCAAAAACGTatcattttta
aggccttgaaATGCATAAAAAAAACTCTACAGAGTGAGATTCATGATGTA
TGAACAAGCATTAAACTAATTTTTGTTAACAATGGTTAGGAATTTAGAAA
AAGGCTTATTATACTGACGCTCTGAAATGAGTAtcgtgaagtcaggtaac
ttgcatcagtggaggctaacatgcatagccctcaaatgactgacaaatca
aagcagcaaaatgtcaaaacaaaggaaccacgcAGCTgcactcgcagctc
tactctaccatttttgtttttattcaactttgcattttaaggaccagtca
ggtcattcatttgagggctatgcatgttagcctccactaatGCAAATTAC
CCTACTTCACGGTAGCATATCACATAATTTGTAACACACAAGTGAAAATT
TGCTTCCCAACTATATTCCGGGGAATCCATGTGCCGTTACCATGGTAATT
TATCTAAAACAATAGAACCATAGAATTGTACACGATTGCAAAGTTAATTA
CAACATAAGTAACTTGCACTTCATCTTAGAAGTGAAAATGTATGTTATCA
CCTTATTAGTGATTTCTGAAGAACCGCAAGCTGGAAATTCTTCATTTTAG
AGTTAAAACGTTCAGTGAAAAATTTAACCTCGTGAGTGAAAGAACGATTA
AAAACAGCAACGTTGTTTTATCATAAATTGCAACTAAATTTTTGGGTTCA
ATTGTTCAAAAGCTGTGTAACAAGAGCACTaatgattttgaaagattttg
taatAATCAAGTAATAAATCTAGTGTTTTGAGCAGCATTTAAAAATTGAC
GTTCTCTATTAAAATGATGCGTTTTTGATCTAGTTGACCTGATTGACCTT
CTGGGAGCAATCGGAGGTATTCAGGGGCTTCCAGggttatcaaaaaattt
ccgGGTTTCTGGGGTTATAAGAGACCAGTATGGAATCCCTGCAAAAGCAA
CAAACAGATATGTTTTGATGGTGAAAACAGGTGAAACAGATTACACTGAT
TACACATTCTCACGTCAAATATATTTGGCGAACTATACTGTGTGCACTAA
TTCCAGACTGGCCCCCAGATCATCCAGATCACCCCATCGTTGCAGGAATA
TTCCCTACCCTGGCCCTAGAAATTTCCAGAGAATCCATCAGGGAGCTGCT
ataaccagacgatctcaatcgaacgcaatcgaccgattgaaatttgattg
tcgaacgcaatcaaatttcaattgaatattacagTACCGCAaatttcaga
ttcgattgatattcgatcgcgttcgattaggATTCGACTGCATTCGATTG
TGTTTGAGTGCGTTGGATTGGGTTTGTATATGTTTATTTGGCAACCACcg
atgtaaaattttttttccaaacataaaaaataaatacaaaataaaaaata
agtaaaatacaaaattaaatcaaaattaaaatggtagagtagaccagacg
atctcaatcgaacggaatcgacgatcaaacCAGTCGTACCAAATCGAACC
CAATCGACTGATTGAAATTGGattgcaatcgaatatcaattgaatctgaa
aattgcggcaATATTCGATTGGGATTTGGTTCAACCGTCGATTCCGTTTA
ATTGAGATTGTCTAATTGAGACCCAATCTCACAATTGAGATTGTCTAATT
GagacccaatctcacggtactcgTTAAAGCTCTAGTCTGATTCGTGGACC
TATTCAAAACCAAAACACAGGCTGTATGgttctttgtattttaaggaagA
CAATCGAATGCAGTAACGACAATCGAACCAgtaccagtcgaacaacaatc
gaaccaatcgaatattatcCAGAACACCCAgatgatctcaatcgaacgga
agcgacgatcgaaccagtcgaaccagtcaaaccaaatcgaacgcaatcga
ccgattgaacttcgattgtcgaacgcaatcgaacgtcaaa Run BLAST on NCBI transcript from alignment at sc0005641:1871..4110 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044481 ID=TCONS_00044481|Name=TCONS_00044481|organism=Clytia hemisphaerica|type=transcript|length=2240bp|location=Sequence derived from alignment at sc0005641:1871..4110 (Clytia hemisphaerica)
tttgacgttcgattgcgttcgacaatcgaagttcaatcggtcgattgcgt
tcgatttggtttgactggttcgactggttcgatcgtcgcttccgttcgat
tgagatcatcTGGGTGTTCTGgataatattcgattggttcgattgttgtt
cgactggtacTGGTTCGATTGTCGTTACTGCATTCGATTGTcttccttaa
aatacaaagaacCATACAGCCTGTGTTTTGGTTTTGAATAGGTCCACGAA
TCAGACTAGAGCTTTAAcgagtaccgtgagattgggtctCAATTAGACAA
TCTCAATTGTGAGATTGGGTCTCAATTAGACAATCTCAATTAAACGGAAT
CGACGGTTGAACCAAATCCCAATCGAATATtgccgcaattttcagattca
attgatattcgattgcaatCCAATTTCAATCAGTCGATTGGGTTCGATTT
GGTACGACTGgtttgatcgtcgattccgttcgattgagatcgtctggtct
actctaccattttaattttgatttaattttgtattttacttattttttat
tttgtatttattttttatgtttggaaaaaaaattttacatcgGTGGTTGC
CAAATAAACATATACAAACCCAATCCAACGCACTCAAACACAATCGAATG
CAGTCGAATcctaatcgaacgcgatcgaatatcaatcgaatctgaaattT
GCGGTActgtaatattcaattgaaatttgattgcgttcgacaatcaaatt
tcaatcggtcgattgcgttcgattgagatcgtctggttatAGCAGCTCCC
TGATGGATTCTCTGGAAATTTCTAGGGCCAGGGTAGGGAATATTCCTGCA
ACGATGGGGTGATCTGGATGATCTGGGGGCCAGTCTGGAATTAGTGCACA
CAGTATAGTTCGCCAAATATATTTGACGTGAGAATGTGTAATCAGTGTAA
TCTGTTTCACCTGTTTTCACCATCAAAACATATCTGTTTGTTGCTTTTGC
AGGGATTCCATACTGGTCTCTTATAACCCCAGAAACCcggaaattttttg
ataaccCTGGAAGCCCCTGAATACCTCCGATTGCTCCCAGAAGGTCAATC
AGGTCAACTAGATCAAAAACGCATCATTTTAATAGAGAACGTCAATTTTT
AAATGCTGCTCAAAACACTAGATTTATTACTTGATTattacaaaatcttt
caaaatcattAGTGCTCTTGTTACACAGCTTTTGAACAATTGAACCCAAA
AATTTAGTTGCAATTTATGATAAAACAACGTTGCTGTTTTTAATCGTTCT
TTCACTCACGAGGTTAAATTTTTCACTGAACGTTTTAACTCTAAAATGAA
GAATTTCCAGCTTGCGGTTCTTCAGAAATCACTAATAAGGTGATAACATA
CATTTTCACTTCTAAGATGAAGTGCAAGTTACTTATGTTGTAATTAACTT
TGCAATCGTGTACAATTCTATGGTTCTATTGTTTTAGATAAATTACCATG
GTAACGGCACATGGATTCCCCGGAATATAGTTGGGAAGCAAATTTTCACT
TGTGTGTTACAAATTATGTGATATGCTACCGTGAAGTAGGGTAATTTGCa
ttagtggaggctaacatgcatagccctcaaatgaatgacctgactggtcc
ttaaaatgcaaagttgaataaaaacaaaaatggtagagtagagctgcgag
tgcAGCTgcgtggttcctttgttttgacattttgctgctttgatttgtca
gtcatttgagggctatgcatgttagcctccactgatgcaagttacctgac
ttcacgaTACTCATTTCAGAGCGTCAGTATAATAAGCCTTTTTCTAAATT
CCTAACCATTGTTAACAAAAATTAGTTTAATGCTTGTTCATACATCATGA
ATCTCACTCTGTAGAGTTTTTTTTATGCATttcaaggccttaaaaatgat
ACGTTTTTGATCTGGACTGGACTGAAGATCTCCTGGAACCCCCCAGTTAC
CCCTTGATAACCCCCCAGTTACCCCTTGATAACCCCGAATCACCCGGAAC
GTGATCTAGCCTATAGCAACCCCTGGTTCGCAAAGGAAATTTATGGGGGC
TGTCCATGGGTTGAAATTACAAGATACCCAAGATCCCATCATTCCCTCAG
ATGCACCCAAATCCCTTGAAACACCATCAACCCCCGGACTGTCCTGAAAA
CTTTGGCTATATACATCTTTACTGGTATACAACACACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044481-exon-sc0005641-1491911889:1871..4110 | TCONS_00044481-exon-sc0005641-1491911889:1871..4110 | Clytia hemisphaerica | exon |
| TCONS_00044481-exon-sc0005641-1510915933:1871..4110 | TCONS_00044481-exon-sc0005641-1510915933:1871..4110 | Clytia hemisphaerica | exon |
| TCONS_00044481-exon-sc0005641-1575043694:1871..4110 | TCONS_00044481-exon-sc0005641-1575043694:1871..4110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005641 | supercontig | sc0005641:1871..4110 . |
Blast
The following BLAST results are available for this feature:
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