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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044482 ID=TCONS_00044482|Name=TCONS_00044482|organism=Clytia hemisphaerica|type=transcript|length=596bp
GAACAGAAAATTAAAGAAGAGCCTGTAGACCAAGTTGAAGAACCACCCAA
GGTCATTGAAAAAGAACCTGAAAAAGCTGAACCACCAGCACCAGTTAAAC
CTGAGGTCAAAGAAGAGCCAGCAGAACCAGAGCCTCAAGCTCCTGCTGTA
CCACCTGCGCACAAAGTAGTGGCTGCATCAGAAGAACTTCTAGATCTTCA
ACGCAAACTGATGGAGAAAGAAAAATCAGTTGTTGATTTAGAGGAGAAGC
TAAACGTATTGAAGCAAAAGAGAATCGCTGATTTAGGGAAATTAAAGGAA
GTGGATAAACTGAAACTTCAAAATGAGCAGttcaTGGAATATAAAACCAA
GTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGTCAAGCTCAAA
ATGAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCANc
aggggggggggtgaagcagttagtacaagacatcatgcctactaactgct
ttcttggaagaagttagtaacaccaccaccttggtacacttagtacagtt
agtactaactgaaattagccttgaaaaaggcttttgaccTTCATAA Run BLAST on NCBI protein sequence of TCONS_00044482-protein >TCONS_00044482-protein ID=TCONS_00044482-protein|Name=TCONS_00044482-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
EQKIKEEPVDQVEEPPKVIEKEPEKAEPPAPVKPEVKEEPAEPEPQAPAV
PPAHKVVAASEELLDLQRKLMEKEKSVVDLEEKLNVLKQKRIADLGKLKE
VDKLKLQNEQFMEYKTKYQESMRDLQNQLRQAQNEAREAADKMSDESDVX
RGGGEAVSTRHHAY Run BLAST on NCBI transcript from alignment at sc0005643:2858..4113- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044482 ID=TCONS_00044482|Name=TCONS_00044482|organism=Clytia hemisphaerica|type=transcript|length=1256bp|location=Sequence derived from alignment at sc0005643:2858..4113- (Clytia hemisphaerica)
GAACAGAAAATTAAAGAAGAGCCTGTAGACCAAGTTGAAGAACCACCCAA
GGTCATTGAAAAAGAACCTGAAAAAGCTGAACCACCAGCACCAGTTAAAC
CTGAGGTCAAAGAAGAGCCAGCAGAACCAGAGCCTCAAGCTCCTGCTGTA
CCACCTGCGCACAAAGTAGTGGCTGCATCAGAAGAACTTCTAGATCTTCA
ACGCAAACTGATGGAGAAAGAAAAATCAGTTGTTGATTTAGAGGAGAAGC
TAAACGTATTGAAGCAAAAGAGAATCGCTGATTTAGGGAAATTAAAGGAA
GTGGATAAACTGAAACTTCAAAATGAGCAGGTATAGCTTATTTGATGTCA
TGTTTCTATCTTTTGCGTTATTGTTCTCAAGTCAGAATGTTTCCATAATA
ACTTCCAAATGTTTTTGCTAATTTCAGCTTGTATTGTTACTTAAAAAGAG
TGAAAAGTCTTTTTTTCTCATAGCCACCAGTTTTTCTTGATTGGATGGAT
GTACATTTTGGTTTTGATGCTATAATGTAGGACTTAATAGTGCAACGAAA
TGTTGGACTACTGCCATGATTTTCTGTTATGTTTTAATGGGGGTTTTTAA
TTTCAAAAGTGTTTTTATGTTTACTTTATATATGAGAGTATGTGTTCGTT
CTGATTTTCAAAACTTTTTGATTTTACTTTTTCTTTTTAGTTCATGGAAT
ATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGT
CAAGCTCAAAATGTAAGACCCGTTTTCTCTCTCATTCAAAGTTCAGACAA
AATCTAGTAACGTTTTACAGATAATTTCTACTTCATTTTCTACCATGAAT
ATTGTACAAGAGGAATATGAGAGAATGCTATGTCGAATTTTTAGCTATGA
AATGCTGTCCGGGAATTTTGTGAACACATTGGTAAAATGGGCTAGGTCCT
TAAAATCGTGACATCTGAAATATTAGAATTGCTTGGTTTAGTTATAACAA
AACATCTTTTATGCCATATCATCACACATAAGTAACCACGTTTTGTTTTC
TCCACAACACAGGAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGTC
AGATGTCANCAGGGGGGGGGGTGAAGCAGTTAGTACAAGACATCATGCCT
ACTAACTGCTTTCTTGGAAGAAGTTAGTAACACCACCACCTTGGTACACT
TAGTACAGTTAGTACTAACTGAAATTAGCCTTGAAAAAGGCTTTTGACCT
TCATAA Coding sequence (CDS) from alignment at sc0005643:2858..4113- >TCONS_00044482 ID=TCONS_00044482|Name=TCONS_00044482|organism=Clytia hemisphaerica|type=CDS|length=1485bp|location=Sequence derived from alignment at sc0005643:2858..4113- (Clytia hemisphaerica)
GAAGCGCGAGAAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCANCAG
GGGGGGGGGTGAAGCAGTTAGTACAAGACATCATGCCTACTAATTCATGG
AATATAAAACCAAGTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTT
CGTCAAGCTCAAAATGAACAGAAAATTAAAGAAGAGCCTGTAGACCAAGT
TGAAGAACCACCCAAGGTCATTGAAAAAGAACCTGAAAAAGCTGAACCAC
CAGCACCAGTTAAACCTGAGGTCAAAGAAGAGCCAGCAGAACCAGAGCCT
CAAGCTCCTGCTGTACCACCTGCGCACAAAGTAGTGGCTGCATCAGAAGA
ACTTCTAGATCTTCAACGCAAACTGATGGAGAAAGAAAAATCAGTTGTTG
ATTTAGAGGAGAAGCTAAACGTATTGAAGCAAAAGAGAATCGCTGATTTA
GGGAAATTAAAGGAAGTGGATAAACTGAAACTTCAAAATGAGCAGGAAGC
GCGAGAAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCANCAGGGGGG
GGGGTGAAGCAGTTAGTACAAGACATCATGCCTACTAATTCATGGAATAT
AAAACCAAGTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGTCA
AGCTCAAAATGAACAGAAAATTAAAGAAGAGCCTGTAGACCAAGTTGAAG
AACCACCCAAGGTCATTGAAAAAGAACCTGAAAAAGCTGAACCACCAGCA
CCAGTTAAACCTGAGGTCAAAGAAGAGCCAGCAGAACCAGAGCCTCAAGC
TCCTGCTGTACCACCTGCGCACAAAGTAGTGGCTGCATCAGAAGAACTTC
TAGATCTTCAACGCAAACTGATGGAGAAAGAAAAATCAGTTGTTGATTTA
GAGGAGAAGCTAAACGTATTGAAGCAAAAGAGAATCGCTGATTTAGGGAA
ATTAAAGGAAGTGGATAAACTGAAACTTCAAAATGAGCAGGAAGCGCGAG
AAGCGGCAGACAAGATGAGTGATGAGTCAGATGTCANCAGGGGGGGGGGT
GAAGCAGTTAGTACAAGACATCATGCCTACTAATTCATGGAATATAAAAC
CAAGTATCAAGAATCAATGAGAGATTTGCAAAATCAGCTTCGTCAAGCTC
AAAATGAACAGAAAATTAAAGAAGAGCCTGTAGACCAAGTTGAAGAACCA
CCCAAGGTCATTGAAAAAGAACCTGAAAAAGCTGAACCACCAGCACCAGT
TAAACCTGAGGTCAAAGAAGAGCCAGCAGAACCAGAGCCTCAAGCTCCTG
CTGTACCACCTGCGCACAAAGTAGTGGCTGCATCAGAAGAACTTCTAGAT
CTTCAACGCAAACTGATGGAGAAAGAAAAATCAGTTGTTGATTTAGAGGA
GAAGCTAAACGTATTGAAGCAAAAGAGAATCGCTGATTTAGGGAAATTAA
AGGAAGTGGATAAACTGAAACTTCAAAATGAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044482-exon-sc0005643-1575043694:3784..4113 | TCONS_00044482-exon-sc0005643-1575043694:3784..4113 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1575043694:3352..3423 | TCONS_00044482-exon-sc0005643-1575043694:3352..3423 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1575043694:2858..3051 | TCONS_00044482-exon-sc0005643-1575043694:2858..3051 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1510915933:3784..4113 | TCONS_00044482-exon-sc0005643-1510915933:3784..4113 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1510915933:3352..3423 | TCONS_00044482-exon-sc0005643-1510915933:3352..3423 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1510915933:2858..3051 | TCONS_00044482-exon-sc0005643-1510915933:2858..3051 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1491911889:3784..4113 | TCONS_00044482-exon-sc0005643-1491911889:3784..4113 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1491911889:3352..3423 | TCONS_00044482-exon-sc0005643-1491911889:3352..3423 | Clytia hemisphaerica | exon |
| TCONS_00044482-exon-sc0005643-1491911889:2858..3051 | TCONS_00044482-exon-sc0005643-1491911889:2858..3051 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005643 | supercontig | sc0005643:2858..4113 - |
Blast
The following BLAST results are available for this feature:
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