TCONS_00044483 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044483
Unique NameTCONS_00044483
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1608

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044483 ID=TCONS_00044483|Name=TCONS_00044483|organism=Clytia hemisphaerica|type=transcript|length=1608bp
caaaaaaaaaaaaaaaaaaaaaaaacatgttgcAAGACATTACTTCTATC
GCATGGGCTAAAATGGTCATTTTCCTTTTATCTGGCGCCCTCCATGGTTT
TGGGTTATATATCTTGAACAGAGTCAGACCACACCCACTGTTCAATGACG
TACAACGAATCTATCTAATGCATTTAAGTATTTGTGAAATGTTTATCTCA
ATTGAAAACTCGTTAGTCGAGTTCGTTTTACGAGTTACACTCGGAAAAAC
TCCAGACCTTTTAAACCGTTTAATGGATATCGGAAGTTTCACATGGTTTA
TCGGGATAATGATTTTGATGACTATTGACCGATTTTTCACCGTTTATTAC
CCGTTGCGTTATCCCGTTTATTGGAATAAACGAAAATCGCAATTCGCAGT
TGGTGGATTATTAAGTATGTCCGCCATCATGGCTGTTGTTTACACCTTCA
TCCCCATGGAAACACAAATGCGGCTTTTGGTACGGGCTTATTATTGGTTC
TCCTTCTTGGTTGTATTTTTGGTCGTCATTTTGGTcacttatttattcat
tttgaagaaaattgctcaaaacaaCAGCTCGACATCAGCAGGATCACAGA
ATAATTCACGATTCAAGAGAAGTCTATTAGTGCCCACCCTTATCATGTCA
ACCTTCATATTGCTTTGGGCTGTTCCCTTCTTAGTTTCATTTGTAGGTAT
CTACGTCAAATTAGATATACCTGCTAAAGTTTGGCAATATGCAATCATCA
TCTTCGGAATTGGGTTCTGCTTGGATGCCATCACTTATATCTTTCTTCAA
CCAagtctgaaaaatgaaataaaaaagttgtttttcacACGTGCTTCCAC
AGATATTTCACAAAGGTGAATTTAAAGAACTGAAGTAAAGAACTGAACCC
CCTAAACAAGTTACTGTAGACAatactaatacaataatgaccggttagta
aggggttgttgcgttgaccgagggcaatattttcagtacagcccgaaaaa
accggtcattattgtatttgttaatcgtttccttcagcttcgattgatgt
ttagcgctttatccaggaaaaatagcgaaataaagcggaAAANNNNNNNN
NNNNNNNNNNNNNNCGAAAAGAGATAagaaattgttataatttctgacgt
cagaaataaaaaatgagagaaatgatgtcaacgcattgttcattttcctt
tgaaagaaatcacatcacaatgaattttcctaacgacgggcaactctggg
cagtgaaggcccgtcgtcatgcgaaaagaaccaattgcattgcgcaaaaa
gccgtgtagcccgctttgaaaaagtaaccggttaacaacgTTCCATTTaa
tatgaaagatttttttacagggaaatcgTTTGAAGAACCGAAAGCGTCGA
ACaaaaaacttcagaaaaatGCAGCTGTTTACAGCTCTTTCGAGGGAGAA
GACACGGAGAAAAAAGGAAGATTCGCCCTACTAAAACAAAAGTTTtggAA
AGACGATTCTCAATCGCGAACGTTGGAAGATTTCAAAGAATTCAAAGAGC
ACTTGAAAAGCAATTTAGTTGAATTCAGCGACCATGAATTGGCAAAGTAT
AAGGTTTG
Run BLAST on NCBI

protein sequence of TCONS_00044483-protein

>TCONS_00044483-protein ID=TCONS_00044483-protein|Name=TCONS_00044483-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
KKKKKKKNMLQDITSIAWAKMVIFLLSGALHGFGLYILNRVRPHPLFNDV
QRIYLMHLSICEMFISIENSLVEFVLRVTLGKTPDLLNRLMDIGSFTWFI
GIMILMTIDRFFTVYYPLRYPVYWNKRKSQFAVGGLLSMSAIMAVVYTFI
PMETQMRLLVRAYYWFSFLVVFLVVILVTYLFILKKIAQNNSSTSAGSQN
NSRFKRSLLVPTLIMSTFILLWAVPFLVSFVGIYVKLDIPAKVWQYAIII
FGIGFCLDAITYIFLQPSLKNEIKKLFFTRASTDISQR
Run BLAST on NCBI

transcript from alignment at sc0005646:210..4103-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044483 ID=TCONS_00044483|Name=TCONS_00044483|organism=Clytia hemisphaerica|type=transcript|length=3894bp|location=Sequence derived from alignment at sc0005646:210..4103- (Clytia hemisphaerica)
CAAAAAAAAAAAAAAAAAAAAAAAACATGTTGCAAGACATTACTTCTATC
GCATGGGCTAAAATGGTCATTTTCCTTTTATCTGGCGCCCTCCATGGTTT
TGGGTTATATATCTTGAACAGAGTCAGACCACACCCACTGTTCAATGACG
TACAACGAATCTATCTAATGCATTTAAGTATTTGTGAAATGTTTATCTCA
ATTGAAAACTCGTTAGTCGAGTTCGTTTTACGAGTTACACTCGGAAAAAC
TCCAGACCTTTTAAACCGTTTAATGGATATCGGAAGTTTCACATGGTTTA
TCGGGATAATGATTTTGATGACTATTGACCGATTTTTCACCGTTTATTAC
CCGTTGCGTTATCCCGTTTATTGGAATAAACGAAAATCGCAATTCGCAGT
TGGTGGATTATTAAGTATGTCCGCCATCATGGCTGTTGTTTACACCTTCA
TCCCCATGGAAACACAAATGCGGCTTTTGGTACGGGCTTATTATTGGTTC
TCCTTCTTGGTTGTATTTTTGGTCGTCATTTTGGTCACTTATTTATTCAT
TTTGAAGAAAATTGCTCAAAACAACAGCTCGACATCAGCAGGATCACAGA
ATAATTCACGATTCAAGAGAAGTCTATTAGTGCCCACCCTTATCATGTCA
ACCTTCATATTGCTTTGGGCTGTTCCCTTCTTAGTTTCATTTGTAGGTAT
CTACGTCAAATTAGATATACCTGCTAAAGTTTGGCAATATGCAATCATCA
TCTTCGGAATTGGGTTCTGCTTGGATGCCATCACTTATATCTTTCTTCAA
CCAAGTCTGAAAAATGAAATAAAAAAGTTGTTTTTCACACGTGCTTCCAC
AGATATTTCACAAAGGTGAATTTAAAGAACTGAAGTAAAGAACTGAACCC
CCTAAACAAGTTACTGTAGACAATACTAATACAATAATGACCGGTTAGTA
AGGGGTTGTTGCGTTGACCGAGGGCAATATTTTCAGTACAGCCCGAAAAA
ACCGGTCATTATTGTATTTGTTAATCGTTTCCTTCAGCTTCGATTGATGT
TTAGCGCTTTATCCAGGAAAAATAGCGAAATAAAGCGGAAAANNNNNNNN
NNNNNNNNNNNNNNCGAAAAGAGATAAGAAATTGTTATAATTTCTGACGT
CAGAAATAAAAAATGAGAGAAATGATGTCAACGCATTGTTCATTTTCCTT
TGAAAGAAATCACATCACAATGAATTTTCCTAACGACGGGCAACTCTGGG
CAGTGAAGGCCCGTCGTCATGCGAAAAGAACCAATTGCATTGCGCAAAAA
GCCGTGTAGCCCGCTTTGAAAAAGTAACCGGTTAACAACGTTCCATTTAA
TATGAAAGATTTTTTTACAGGGAAATCGTTTGAAGAACCGAAAGCGTCGA
ACAAAAAACTTCAGAAAAATGCAGCTGTTTACAGCTCTTTCGAGGGAGAA
GGTACGTCTTACACAGTGGAGTCTCCATAACTCGAACACACACGTGGAAC
ACAAATTTGTTCAAGTTAAGGAAGTATCGAGTTATGGAGTAAGGTTTATT
AAGGCCTTGTTAAGGACATGTTTTTTTTTGACTGTACCAAAATGCCGATT
TTCAACCAACCCGGTTCAAATCGGCACTAACAGAGACAGCTGAACCCTTT
CTTATCGTTATTCAAAAATAAAAAAATAGATTAGTAGCTCTGTCCGATAC
TTTTTGCCCGATCTTAATAGCTTTTATGGAACTCAAGATATTGCTTGTTG
AATCCGGAGTATTTCAGGATGAAAAAAATCATAGTCTATTTCGGATTTAT
AAAGTCGGCTCTATATTTGGCCTTTGTCGTGTCCAATTTATATACGAAAC
TTATATCAGGGTGTAGCTAAAGGATTGAATTTTCACATTAACCTCTTTTT
TTTGGAAAAAACCGGAGGAAAATGGGATCAAGTTGATCATTTTTGAAATC
TAGGTGCTAATTCTAATCGTATATATTTTCCTGACAAGTCTATCTATCGG
GGAGGTGATTTGAGATTTTTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTTAGTTGATAAGAAAGGAACAAACTAAAGAAAACAGGAAT
TGTTAAAATGAGTGAAAAATGATTAAAAAAGTCGTGATGATTGTTTTGAT
CATAACTCACTCAGGCCTTTAAAAAAATTACTCCTCAGGCTATTTTATGA
TTTTAGGCTACCTCAGGCATGCATAGAAACCTCTTCAGGACCGAATGATG
AGTCATGAGATATGATCCAAAACACTCTATGATTAATTAATCCTGAAATA
CTCCGAATTTTGAAATTTCAAATAGCTNTCCAAAACACTCTATGATTAAT
TAATCCTGAAATACTCCGAATTTTGAAATTTCAAATAGCTCATTTTAAAG
CCCTTCCCAAATCTCAATACATATCAAAAATTTGGGAAAATTCATCATGC
GAATGACGAAATAATTAAAATAAAGTTATTTTCACGATTTTCGAAAACCT
GATTTTGGTACAGTCAAAAAAAAACATGTCCTTAACTAAAAGGAAACTGA
AACTTGTTTGAGTTTAAGGAGACATTCGAGCTATAGAGGTTCGAGTTAAC
GAGTTTCTATAGTATTACGCAAATTTTTAAACCAAATGAGTTTAGTTTTG
GCTCATAATTCTACTATCTATTGCAGGGTAAGAAATTTTGCGAAGGGGAA
CCGACCTTGAAGAAAATGACTCGTTTTTCATTAATATTCTTTCTTTCTCC
TTTTTTCACAGACACGGAGAAAAAAGGAAGATTCGCCCTACTAAAACAAA
AGTTTGTAAGTAAACTAATAATTGATTACAAAATTGTACATTTTGGGAAA
AATCTGCTAGTGCTTATTTTCGTTTGACGGTCAATGCACTCCATTGCAAA
CATTTTGAACTCTGTNATTACAAAATTGTACATTTTGGGAAAAATCTGCT
AGTGCTTATTTTCGTTTGACGGTCAATGCACTCCATTGCAAACATTTTGA
ACTCTGTGTAATCAAGGTTCTGATCGCCAGAAACGTCAAACTCGGAGAAA
ATCTCACGAATAGAGTCGCCTTGTAGATTGAAAAGAAAACCAAAGTTTTC
AAATTCTTCAGCTGATATATTCCCTGATTTATCTTCGTCTAAAAGGTCGA
AAACTGTTCGTGAATGGCGGTAAATGAAATGTTTTTCCTCTCGGTCTTGA
ACTGAGATTACGATACAAATCAAAAGATAAAACTCATTGAAATCAATACT
ACCCGATCCATCCACGTCCAACATGTCAAAAACCTTGTAAATTTGTGTTG
TGGTCAAATCTGTGATTGATTTCAAGAAAGCACAGAACTGAACATCGTTT
AAAGCATTGTCCCCATGCACATCGAGTAGTGTGAAAAAATCATAAATCAC
TTTCAAATTTCTTCCTGATAATAAACTATAGTTTTTGTCAAGATGTATAT
ACTGCAAGAGTTTTGATGTGACCTTCATCTTTTTGTTTTTGTGACTGTCG
ATAAAAATCAAGTGATTTCTTTTGTTGACAAAATATTTCCCGCGCTTTCA
TTTTTGTAAACATTCGAATTGTTGTAAAACGTTCGATTTTTGAATGTTCG
AATAAAAACATTCGAAACAGGAAGTAGATTCGAATGAAACACGCGAAACT
TAGCAATTTTTTGTTTGCTTTTTTCTTTCAGTGGAAAGACGATTCTCAAT
CGCGAACGTTGGAAGATTTCAAAGAATTCAAAGAGCACTTGAAAAGCAAT
TTAGTTGAATTCAGCGACCATGAATTGGCAAAGTATAAGGTTTG

Coding sequence (CDS) from alignment at sc0005646:210..4103-

>TCONS_00044483 ID=TCONS_00044483|Name=TCONS_00044483|organism=Clytia hemisphaerica|type=CDS|length=867bp|location=Sequence derived from alignment at sc0005646:210..4103- (Clytia hemisphaerica)
AAAAAAAAAAAAAAAAAAAAAAACATGTTGCAAGACATTACTTCTATCGC
ATGGGCTAAAATGGTCATTTTCCTTTTATCTGGCGCCCTCCATGGTTTTG
GGTTATATATCTTGAACAGAGTCAGACCACACCCACTGTTCAATGACGTA
CAACGAATCTATCTAATGCATTTAAGTATTTGTGAAATGTTTATCTCAAT
TGAAAACTCGTTAGTCGAGTTCGTTTTACGAGTTACACTCGGAAAAACTC
CAGACCTTTTAAACCGTTTAATGGATATCGGAAGTTTCACATGGTTTATC
GGGATAATGATTTTGATGACTATTGACCGATTTTTCACCGTTTATTACCC
GTTGCGTTATCCCGTTTATTGGAATAAACGAAAATCGCAATTCGCAGTTG
GTGGATTATTAAGTATGTCCGCCATCATGGCTGTTGTTTACACCTTCATC
CCCATGGAAACACAAATGCGGCTTTTGGTACGGGCTTATTATTGGTTCTC
CTTCTTGGTTGTATTTTTGGTCGTCATTTTGGTCACTTATTTATTCATTT
TGAAGAAAATTGCTCAAAACAACAGCTCGACATCAGCAGGATCACAGAAT
AATTCACGATTCAAGAGAAGTCTATTAGTGCCCACCCTTATCATGTCAAC
CTTCATATTGCTTTGGGCTGTTCCCTTCTTAGTTTCATTTGTAGGTATCT
ACGTCAAATTAGATATACCTGCTAAAGTTTGGCAATATGCAATCATCATC
TTCGGAATTGGGTTCTGCTTGGATGCCATCACTTATATCTTTCTTCAACC
AAGTCTGAAAAATGAAATAAAAAAGTTGTTTTTCACACGTGCTTCCACAG
ATATTTCACAAAGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028113XLOC_028113Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044483-exon-sc0005646-1575043694:2653..4103TCONS_00044483-exon-sc0005646-1575043694:2653..4103Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1575043694:1199..1242TCONS_00044483-exon-sc0005646-1575043694:1199..1242Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1575043694:210..322TCONS_00044483-exon-sc0005646-1575043694:210..322Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1510915933:2653..4103TCONS_00044483-exon-sc0005646-1510915933:2653..4103Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1510915933:1199..1242TCONS_00044483-exon-sc0005646-1510915933:1199..1242Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1510915933:210..322TCONS_00044483-exon-sc0005646-1510915933:210..322Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1491911889:2653..4103TCONS_00044483-exon-sc0005646-1491911889:2653..4103Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1491911889:1199..1242TCONS_00044483-exon-sc0005646-1491911889:1199..1242Clytia hemisphaericaexon
TCONS_00044483-exon-sc0005646-1491911889:210..322TCONS_00044483-exon-sc0005646-1491911889:210..322Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044483-proteinTCONS_00044483-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005646supercontigsc0005646:210..4103 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.941211	1.03863	2.293	2.71076	9.0741	6.62613	6.32235	6.61163	18.871	13.1793	7.80087	15.6203	11.5192	9.61763	2.88153	3.45588	3.40467	3.47292	15.4778	19.7341	2.81869	3.6954	2.2561	2.59815	5.30403	4.35009	2.85928	1.90363	2.89462	2.43999
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044483 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top