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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044485 ID=TCONS_00044485|Name=TCONS_00044485|organism=Clytia hemisphaerica|type=transcript|length=691bp
AACAGATAAGAGAAGCCTGTTTGAGATCTGTCTTTCCTTTACAGATTTTT
TTGTGTGGTGtagtttgaaagtttttatacGCCGTGTTATAGAAGTTCTA
AAGTGATGGAGAAAACGGTTGAAAATAATCTTTTACAAACTCTTAACATC
GAAAGATTGGTCGAATTTGACAGTCACATTGGggatgtttttcaaaatgt
tttttatacaCTCTCGAATAACACGGCAATGAAGATAGAAAAAATGGGCA
TTGTGTCTCATTTCTTAAGGAGTTGGAAAGACACGGTCGGTGCCTCTAGT
ATCTCAAAAACATTACCATCTATCATAACAGGAAGCATCGTTGAAGGAGC
TTGTCTTTCTCGTTTATACCATCCCTCACATGAGCAGTCCCTGGAACTTG
AAGCCGACATTATGTATATTGTAGGGGTCATCGATGAACAAACCGCAAAT
CAATGTTTTCAGGTACATAAGATTAAAATGGGTAATGATCATGACgtttt
aacacccctgtgtcacagacccacgccccactgaaaaattggcgaaaata
ccctagaattttagccccgttgaaaaattgaatttaatttcatccccatt
cgaaattcaatgtttaaaaatcgcacttcaaaaccatccctattggattt
ttcaaccttggaactgtaaattttctatccccattggaatt Run BLAST on NCBI transcript from alignment at sc0005647:202..1986+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044485 ID=TCONS_00044485|Name=TCONS_00044485|organism=Clytia hemisphaerica|type=transcript|length=1785bp|location=Sequence derived from alignment at sc0005647:202..1986+ (Clytia hemisphaerica)
AACAGATAAGAGAAGCCTGTTTGAGATCTGTCTTTCCTTTACAGATTTTT
TTGTGTGGTGtagtttgaaagtttttatacGCCGTGTTATAGAAGTTCTA
AAGTGATGGAGAAAACGGTTGAAAATAATCTTTTACAAACTCTTAACATC
GAAAGATTGGTCGAATTTGACAGTCACATTGGggatgtttttcaaaatgt
tttttatacaCTCTCGAATAACACGGCAATGAAGATAGAAAAAATGGGCA
TTGTGTCTCATTTCTTAAGGAGTTGGAAAGACACGGTCGGTGCCTCTAGT
ATCTCAAAAACATTACCATCTATCATAACAGGTAACAAATCTTAATCTAA
AACTTGTTCACAATGTCCTGCGGAGGAGGTCCTTGagcgaaaaaagtttt
gaaagactCTCACTATCCCTTAGCACAAGTAAaatagaataatttttttc
attccattCAACTTTGAAGCCACAGAAAGCATATTTCATCCAATTGATTT
CATAGATATTCAAACCCCACCCATCTTGATATCGTCACCTACTGGCCAAA
GAGACAGAGTACGTGATGTTAAGTCTAttcgagacaggggtgtaatctGA
GCTGTTCTGCATCAACTTCCTTCCCTCATGTGCTAGCACGCTAGAGGACT
ATACTTAAAACATTATATAATGGTCTTAAGGAAACCCGGAAAGGgtatac
ttttttataagagcaaactatataagaatataaggcttcgctggccaaaa
tctaaagaacaagttaagaacacttaAAGGTTTCGTGACCTTTAAAACNt
ttttttgagcattttgatgtaatttcttaagaaattgcatgttttgaagt
ttccaaagccttagtatgttcttagaatgttcttaaatttttgggctcga
agccttatgttcttatatagtttgttcttataaaaaaaagtgtactggCC
ACAGAGACAGAGTACGTGATGTTAAGTCTAttcgagacaggggtgtaatc
tGAGCTGTTCTGCATCAACTTCCTTCCCTCGTGTGCTAGCACGCTAGAGG
ACTATACTTAAAACATTATATAATGGTCTTAAGGAAACCCGGAAAGGgta
tacttttttataagagcaaactatataagaatataaggcttcgctggcca
aaatctaaagaacaagttaagaacacttaAAGGTTTCGTGACctttaaaa
catccaatttcttgGGAAATTGCACAAGAATGCTCATTAAATGAATGatg
aaattaagaatttttctagacataaaaaattatttgaattttcatgtata
aaaaaatgtgtgagTACAACAGAGTTACAATTTTAATGTCATCCcataac
aattatatacctATAACACCTATATTATTATATGATACGTATTATAAATG
ACTTCGTTCTATTTCATCCATATAGGAAGCATCGTTGAAGGAGCTTGTCT
TTCTCGTTTATACCATCCCTCACATGAGCAGTCCCTGGAACTTGAAGCCG
ACATTATGTATATTGTAGGGGTCATCGATGAACAAACCGCAAATCAATGT
TTTCAGGTACATAAGATTAAAATGGGTAATGATCATGACgttttaacacc
cctgtgtcacagacccacgccccactgaaaaattggcgaaaataccctag
aattttagccccgttgaaaaattgaatttaatttcatccccattcgaaat
tcaatgtttaaaaatcgcacttcaaaaccatccctattggatttttcaac
cttggaactgtaaattttctatccccattggaatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044485-exon-sc0005647-1491911889:202..532 | TCONS_00044485-exon-sc0005647-1491911889:202..532 | Clytia hemisphaerica | exon |
| TCONS_00044485-exon-sc0005647-1510915933:202..532 | TCONS_00044485-exon-sc0005647-1510915933:202..532 | Clytia hemisphaerica | exon |
| TCONS_00044485-exon-sc0005647-1575043694:202..532 | TCONS_00044485-exon-sc0005647-1575043694:202..532 | Clytia hemisphaerica | exon |
| TCONS_00044485-exon-sc0005647-1491911889:1627..1986 | TCONS_00044485-exon-sc0005647-1491911889:1627..1986 | Clytia hemisphaerica | exon |
| TCONS_00044485-exon-sc0005647-1510915933:1627..1986 | TCONS_00044485-exon-sc0005647-1510915933:1627..1986 | Clytia hemisphaerica | exon |
| TCONS_00044485-exon-sc0005647-1575043694:1627..1986 | TCONS_00044485-exon-sc0005647-1575043694:1627..1986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005647 | supercontig | sc0005647:202..1986 + |
Blast
The following BLAST results are available for this feature:
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