TCONS_00044488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044488
Unique NameTCONS_00044488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044488 ID=TCONS_00044488|Name=TCONS_00044488|organism=Clytia hemisphaerica|type=transcript|length=573bp
TATGTCATAACAGTGTCGACAAAAATTATTTGTCAACAAAAGGGAGACAG
TCAAAAACAAATGAGTGTGGTAAATGGTGTGCTGTGGAAAAAAATAAGTT
AACTGTAGACTATATTATAccaagttttttatttattgttcgTTATTGTT
GATATTTTCTTCGGTAGGGTCCACATAAACAAAGTTTGTTTTCATTAAGG
TCAACTCTAAAGCTGCCTTTTCTTTTTGTAGATCGAGCAACTCAGCATGC
CTTcgttcattttttatcttcaataacacttctttgtttttcaaacgCTG
AAATTTTAGTTTTGCTTTTTGAATGTTCAGCTCTTTGATTAGACATTGTC
TTTGAATAGTTAAGGtgcttgttttatttttctttgaggGTTTCTTTGAC
TGTAAGatgtttttcttcttgtttatTGTTGAAGGATTCTGGCTGGTTTT
AGAGGGTGGACTGAACAACATCACATCATTCTCGATGAGTTTATTTTGGC
TGCTAGGCCCGGGTTGATCCAATGAAATCGAGTTGCTCTGGATATCTAAA
AAGACAAGGGTggattaaaatat
Run BLAST on NCBI

protein sequence of TCONS_00044488-protein

>TCONS_00044488-protein ID=TCONS_00044488-protein|Name=TCONS_00044488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MLFSPPSKTSQNPSTINKKKNILQSKKPSKKNKTSTLTIQRQCLIKELNI
QKAKLKFQRLKNKEVLLKIKNERRHAELLDLQKEKAALELTLMKTNFVYV
DPTEENINNNEQ
Run BLAST on NCBI

transcript from alignment at sc0005661:715..1287

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044488 ID=TCONS_00044488|Name=TCONS_00044488|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at sc0005661:715..1287 (Clytia hemisphaerica)
atattttaatccACCCTTGTCTTTTTAGATATCCAGAGCAACTCGATTTC
ATTGGATCAACCCGGGCCTAGCAGCCAAAATAAACTCATCGAGAATGATG
TGATGTTGTTCAGTCCACCCTCTAAAACCAGCCAGAATCCTTCAACAata
aacaagaagaaaaacatCTTACAGTCAAAGAAACcctcaaagaaaaataa
aacaagcaCCTTAACTATTCAAAGACAATGTCTAATCAAAGAGCTGAACA
TTCAAAAAGCAAAACTAAAATTTCAGcgtttgaaaaacaaagaagtgtta
ttgaagataaaaaatgaacgAAGGCATGCTGAGTTGCTCGATCTACAAAA
AGAAAAGGCAGCTTTAGAGTTGACCTTAATGAAAACAAACTTTGTTTATG
TGGACCCTACCGAAGAAAATATCAACAATAAcgaacaataaataaaaaac
ttggTATAATATAGTCTACAGTTAACTTATTTTTTTCCACAGCACACCAT
TTACCACACTCATTTGTTTTTGACTGTCTCCCTTTTGTTGACAAATAATT
TTTGTCGACACTGTTATGACATA

Coding sequence (CDS) from alignment at sc0005661:715..1287

>TCONS_00044488 ID=TCONS_00044488|Name=TCONS_00044488|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0005661:715..1287 (Clytia hemisphaerica)
ATGTTGTTCAGTCCACCCTCTAAAACCAGCCAGAATCCTTCAACAataaa
caagaagaaaaacatCTTACAGTCAAAGAAACcctcaaagaaaaataaaa
caagcaCCTTAACTATTCAAAGACAATGTCTAATCAAAGAGCTGAACATT
CAAAAAGCAAAACTAAAATTTCAGcgtttgaaaaacaaagaagtgttatt
gaagataaaaaatgaacgAAGGCATGCTGAGTTGCTCGATCTACAAAAAG
AAAAGGCAGCTTTAGAGTTGACCTTAATGAAAACAAACTTTGTTTATGTG
GACCCTACCGAAGAAAATATCAACAATAAcgaacaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028117XLOC_028117Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044488-proteinTCONS_00044488-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044488-exon-sc0005661-1491911889:715..1287TCONS_00044488-exon-sc0005661-1491911889:715..1287Clytia hemisphaericaexon
TCONS_00044488-exon-sc0005661-1510915933:715..1287TCONS_00044488-exon-sc0005661-1510915933:715..1287Clytia hemisphaericaexon
TCONS_00044488-exon-sc0005661-1575043694:715..1287TCONS_00044488-exon-sc0005661-1575043694:715..1287Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005661supercontigsc0005661:715..1287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.292399	0.475225	0.110356	0.107966	0.920072	0.623188	1.00247	1.05581	0.574931	1.42429	0.197493	0.908768	0.583396	0.134636	0.0553446	0.296966	0.0731676	0.224983	1.1397	1.30103	0.94236	0.689475	0	0.507998	3.66258	3.82913	0.400937	0.14263	0.86544	0.220437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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