TCONS_00044491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044491
Unique NameTCONS_00044491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044491 ID=TCONS_00044491|Name=TCONS_00044491|organism=Clytia hemisphaerica|type=transcript|length=283bp
TTTCACAGTTGATGAATTTTCACTTCTTTTAAACGGCGTGTGCGAAATCG
ATGTTTCTGATTGGCAAAAGAACACCAGGTATGATGGGTATTGTacaagt
gatgacgtcatcgtttggTTTTGGACGCTTGTTCACTCTCTACCACAAGA
AGAGAAATCGTTGTTGTTGAAATTCGTCACTGGTACGCCCTGTTTACCCA
TCGGTGGTTTTGCTAATCTGATTGGCTTAGGCGGTGGTGTTGCACAGTTC
ACCATCGCCAAAGTAGGCTCGAATACACAGGTA
Run BLAST on NCBI

transcript from alignment at sc0005670:1..898+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044491 ID=TCONS_00044491|Name=TCONS_00044491|organism=Clytia hemisphaerica|type=transcript|length=898bp|location=Sequence derived from alignment at sc0005670:1..898+ (Clytia hemisphaerica)
TTTCACAGTTGATGAATTTTCACTTCTTTTAAACGGCGTGTGCGAAATCG
ATGTTTCTGATTGGCAAAAGAACACCAGGGTATCTATCCATATGTTCCTT
TTCCAGGCATTGTTTCCAGGCATTGTTTTTAAAaggattattttgaaata
aactgtcctttttttatttatagaaAACTATTAAAAATTGCTCGATCCCC
GTTTCCCAGCTAACTTGCTACAAGTCTAAAACTTTATCCCCTTAATcagc
ttttttaaatgattaaaggttttgtttataaataagagtgatatcgtttg
cttactcatcaattttaattcacaagtttttttcacattgaattgacact
gatgtagagcaagattggtcggaaagagagaaataaaaacattttttgct
tatgtaagcataatataacaataggtggagactgtcctgatatgaaatat
gtgtcttatatgaaacgggaacacttatgtaaaaagaaaacctttaaaac
tgTCACCAAAATAGTACAACGCCCatccaaaatataattttcattgCAAA
AAATTATCCTCATTTCGCAAACtattttcaattctttcttGTTCTCGACC
atcctttcttttctttatcgCAAAGTATGATGGGTATTGTacaagtgatg
acgtcatcgtttggTTTTGGACGCTTGTTCACTCTCTACCACAAGAAGAG
AAATCGTTGTTGTTGAAATTCGTCACTGGTACGCCCTGTTTACCCATCGG
TGGTTTTGCTAATGTGATTGGCTTAGGCGGTGGTGTTGCACAGTTCACCA
TCGCCAAAGTAGGCTCGANAGGTTTTGCTAATCTGATTGGCTTAGGCGGT
GGTGTTGCACAGTTCACCATCGCCAAAGTAGGCTCGAATACACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028120XLOC_028120Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044491-exon-sc0005670-1491911889:1..79TCONS_00044491-exon-sc0005670-1491911889:1..79Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1510915933:1..79TCONS_00044491-exon-sc0005670-1510915933:1..79Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1575043694:1..79TCONS_00044491-exon-sc0005670-1575043694:1..79Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1491911889:626..752TCONS_00044491-exon-sc0005670-1491911889:626..752Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1510915933:626..752TCONS_00044491-exon-sc0005670-1510915933:626..752Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1575043694:626..752TCONS_00044491-exon-sc0005670-1575043694:626..752Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1491911889:822..898TCONS_00044491-exon-sc0005670-1491911889:822..898Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1510915933:822..898TCONS_00044491-exon-sc0005670-1510915933:822..898Clytia hemisphaericaexon
TCONS_00044491-exon-sc0005670-1575043694:822..898TCONS_00044491-exon-sc0005670-1575043694:822..898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005670supercontigsc0005670:1..898 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.1079	25.507	20.462	21.0725	18.5989	13.1767	15.8972	12.5931	14.8281	17.3742	26.0185	18.3705	13.2843	16.4236	13.5024	18.8372	14.2806	21.9557	7.58324	12.6965	5.51779	14.1298	19.0851	16.3596	15.8288	24.608	2.60845	3.47975	12.6685	15.5962
Blast
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BLAST of TCONS_00044491 vs. Swiss-Prot (Human)
Match: HACE1 (E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.619e-16
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:   14 EFSLLLNGVCEIDVSDWQKNTRY-DGYCTSDDVIVWFWTLVHSLPQEEKSLLLKFVTGTPCLP 199
            E  LLL+G+ EIDVSDW KNT Y  GY   D VI WFW +V  + QEE+ LLL+FVTG+  +P
Sbjct:  780 ELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGSSRVP 842
The following BLAST results are available for this feature:
BLAST of TCONS_00044491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HACE11.619e-1657.14E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens ... [more]
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