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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044492 ID=TCONS_00044492|Name=TCONS_00044492|organism=Clytia hemisphaerica|type=transcript|length=975bp
ACTAGATATTCAACGAAAAGTTATTATTTCGTGAGAAAGCAAAATCACGG
ACAGACTCACACGGTGTAGAAATGTATTCCAACCTACCAAAAGAATTTCA
AGAAATCGCAAGGCGTTTGGCAAGACAGGATCGCGAGCTTAAAAAGAGTG
AATCCGACCTCCGTGGAAGATCAAATTCACGAAAAAGTAGTCGTATGACG
AGTAGAGCTTCTAGTCTATCTCCAACACGTGATGTGAAACCACGAAGCCG
CTCAAAATCAAACGATAGAGAAAGTAAAATGGAAATGTTCACCTTCGAAA
AGgAAAGTTCATCAAAACAATTAAGTCGTTCTTCAAGTATACGATCGATT
CCGTCGACACCTGCACTAAGCCGACAACACCCGTTACCCGAGCTTCAATC
AAGAGCGAAATCGCCTTCTGCTTCACCTGGGAGAAGCCCTGCTCACAGGA
ATAGTCACgagaaagaaaaatacaaaacgaAAAACTCAAAAGGAAGCATT
AAATCTACGCCAAGCCCAGTTAGCAAATTATACACCTTCACGACTGTCAA
TGATTCATTTGCAACGTCGCCGCTAGGCAGCATGACACCATTCCCTATGG
AAGCAGCAGTTCATTAATTTTGGTGTAATATCtttttgtaaaattgtaaa
TAGCCTTTGTCATATACTTGatagaatataaaaaaattatgaaattaatt
tttgtatCTTTCACAGGGACGATTTACATGTATTcagtaatacacctttt
tgaccgtagccgccaatagccgcgcgggcattttttgtccgttttaccac
cctaaaaccgccccagtctttttttttgcacctagagacaatagaaaaaa
gtgtaaaaaaagaattggatcaagtttagggtggtaaatcgATTAATAAA
GTGGCATGCGTCTGACTGCacaactacggtcgaaaaggtgtattgaatta
ATTTTGTGACGTGTTAATGATTTTC Run BLAST on NCBI protein sequence of TCONS_00044492-protein >TCONS_00044492-protein ID=TCONS_00044492-protein|Name=TCONS_00044492-protein|organism=Clytia hemisphaerica|type=polypeptide|length=181bp
MYSNLPKEFQEIARRLARQDRELKKSESDLRGRSNSRKSSRMTSRASSLS
PTRDVKPRSRSKSNDRESKMEMFTFEKESSSKQLSRSSSIRSIPSTPALS
RQHPLPELQSRAKSPSASPGRSPAHRNSHEKEKYKTKNSKGSIKSTPSPV
SKLYTFTTVNDSFATSPLGSMTPFPMEAAVH Run BLAST on NCBI transcript from alignment at sc0005677:1307..3734- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044492 ID=TCONS_00044492|Name=TCONS_00044492|organism=Clytia hemisphaerica|type=transcript|length=2428bp|location=Sequence derived from alignment at sc0005677:1307..3734- (Clytia hemisphaerica)
ACTAGATATTCAACGAAAAGTTATTATTTCGTGAGAAAGCAAAATCACGG
ACAGACTCACACGGTGTAGAAATGTATTCCAACCTACCAAAAGAATTTCA
AGAAATCGCAAGGCGTTTGGCAAGACAGGATCGCGAGCTTAAAAAGAGTG
AATCCGACCTCCGTGGAAGATCAAATTCACGAAAAAGTAGTCGTATGACG
AGTAGAGCTTCTAGTCTATCTCCAACACGTGATGTGAAACCACGAAGCCG
CTCAAAATCAAACGATAGAGAAAGTAAAATGGAAATGTTCACCTTCGAAA
AGGTAATTCATATTGTTATGTTTTATATGAAGCGATCTAGAGGGNTTCGA
AAAGGTAATTCCTATTGTTATGTTTTATATGAAGCGATCTAGAGGGGTTA
GAACCGGCTGTGACCTTACGTTGTAAGCTTACAGCGAATATTCAGGCCCT
TTGAAACAACCATAAAAGTGGAGGGGCTAAAGGATCTCAAAGAGATTCCC
GATGGATTAGAGAAAAAAGTCTATTTTGCTTAAAAGTGGAGAGCCTCCCC
GCTTCCTCCGGGCCTGATATTGTATTTTTTTTTAATATTTAGCCTCTACA
AAAATATAATGTATATGTATAATGTATGTTTCAAAACACTTTTTGGTCTA
CATTACTACTATCCTCATTATCAGACATCATGGGAAACTTATTTAACAGA
TTCCTACTGACTTTCGCGCCTTTTGCTAGAAAATATAAGTATATTTTTTA
TTAAAATGCCTTTTTTCTGTTCGGAAGAGTTTTTGCCCCCTATTTTGTGT
CTGATAGTTGAATATGATTGGATTTGGATTCGAATGGGTTTGATTTTTTT
TCTACAGGAAAGTTCATCAAAACAATTAAGTCGTTCTTCAAGTATACGAT
CGATTCCGTCGACACCTGCACTAAGCCGACAACACCCGTTACCCGAGCTT
CAATCAAGAGCGAAATCGCCTTCTGCTTCACCTGGGAGAAGCCCTGCTCA
CAGGAATAGTCACGAGAAAGAAAAATACAAAACGAAAAACTCAAAAGGAA
GCATTAAATCTACGCCAAGCCCAGTTAGCAAATTATACACCTTCACGACT
GTCAATGATTCATTTGCAACGTCGCCGCTAGGTAAAGGATTTCTATTGCT
TTTCACCTTTTGACGTGTCTCACTTTCCTTGAAATACAAGGAAATTTTAA
TTCATACACTGTGATAATCAGGGCACAACGACCTAGTCAAAATTTCACTA
ATTTATAAGAGGGCTAATAATATCCAAATTTCTTCATAATAACTTAAATT
CGTTATACCCCTTCTCTCCTAGCTAATAAAGAAAGAACGGCGTCTTTTTT
ACGCGGACATTCCTGTCCAATTTAGTAAACAAACCATATATCCAATAAAA
ATAGCATTTTTCTTTTCTGCAAGGCTCCAGTGTCGACCGAAAATCTAAAA
CCCCGGGGCGGGGGGTACGGTACTTAGGCAAATGGAGGGTACGGTATGTG
CCGCCAATGTTTCCAAAGTCCCGCTAAGGGTCGGAAAAATCAGAAAATGA
AATTTCAGATCCACTAAGGGTAGGAGAAATAGGAAAATTTCAACTTTTTA
CCCCCAGAAAGATCAAAATTTGGTCAAATTTGGTCAAATTTGTCCCGGTA
AGAGTCGTAAAATTGACAACATTTTCCTTTGTTTTCTCCTTTTTAGTCCC
GGTAGGGGTCCGAGGGTCAAAAGTCGGGCTGCGCCCCCCCCCCCCCCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGCCCCCCCCCCCCCCCCG
TCAGCTCGCAACTCTAGTATCCCCGGTCTAAAACAGTATGTTCAAGGGTA
AAATACCACAAAAGAAGTCTAGCAAAGGAATTTCTAGAATAACAGAATTT
TTGAATCGATTTTCTTATTCTCTTTTTAGGCAGCATGACACCATTCCCTA
TGGAAGCAGCAGTTCATTAATTTTGGTGTAATATCTTTTTGTAAAATTGT
AAATAGCCTTTGTCATATACTTGATAGAATATAAAAAAATTATGAAATTA
ATTTTTGTATCTTTCACAGGGACGATTTACATGTATTCAGTAATACACCT
TTTTGACCGTAGCCGCCAATAGCCGCGCGGGCATTTTTTGTCCGTTTTAC
CACCCTAAAACCGCCCCAGTCTTTTTTTTTGCACCTAGAGACAATAGAAA
AAAGTGTAAAAAAAGAATTGGATCAAGTTTAGGGTGGTAAATCGATTAAT
AAAGTGGCATGCGTCTGACTGCACAACTACGGTCGAAAAGGTGTATTGAA
TTAATTTTGTGACGTGTTAATGATTTTC Coding sequence (CDS) from alignment at sc0005677:1307..3734- >TCONS_00044492 ID=TCONS_00044492|Name=TCONS_00044492|organism=Clytia hemisphaerica|type=CDS|length=1638bp|location=Sequence derived from alignment at sc0005677:1307..3734- (Clytia hemisphaerica)
GCAGCATGACACCATTCCCTATGGAAGCAGCAGTTCATTAAGAAAGTTCA
TCAAAACAATTAAGTCGTTCTTCAAGTATACGATCGATTCCGTCGACACC
TGCACTAAGCCGACAACACCCGTTACCCGAGCTTCAATCAAGAGCGAAAT
CGCCTTCTGCTTCACCTGGGAGAAGCCCTGCTCACAGGAATAGTCACGAG
AAAGAAAAATACAAAACGAAAAACTCAAAAGGAAGCATTAAATCTACGCC
AAGCCCAGTTAGCAAATTATACACCTTCACGACTGTCAATGATTCATTTG
CAACGTCGCCGCTAGATGTATTCCAACCTACCAAAAGAATTTCAAGAAAT
CGCAAGGCGTTTGGCAAGACAGGATCGCGAGCTTAAAAAGAGTGAATCCG
ACCTCCGTGGAAGATCAAATTCACGAAAAAGTAGTCGTATGACGAGTAGA
GCTTCTAGTCTATCTCCAACACGTGATGTGAAACCACGAAGCCGCTCAAA
ATCAAACGATAGAGAAAGTAAAATGGAAATGTTCACCTTCGAAAAGGCAG
CATGACACCATTCCCTATGGAAGCAGCAGTTCATTAAGAAAGTTCATCAA
AACAATTAAGTCGTTCTTCAAGTATACGATCGATTCCGTCGACACCTGCA
CTAAGCCGACAACACCCGTTACCCGAGCTTCAATCAAGAGCGAAATCGCC
TTCTGCTTCACCTGGGAGAAGCCCTGCTCACAGGAATAGTCACGAGAAAG
AAAAATACAAAACGAAAAACTCAAAAGGAAGCATTAAATCTACGCCAAGC
CCAGTTAGCAAATTATACACCTTCACGACTGTCAATGATTCATTTGCAAC
GTCGCCGCTAGATGTATTCCAACCTACCAAAAGAATTTCAAGAAATCGCA
AGGCGTTTGGCAAGACAGGATCGCGAGCTTAAAAAGAGTGAATCCGACCT
CCGTGGAAGATCAAATTCACGAAAAAGTAGTCGTATGACGAGTAGAGCTT
CTAGTCTATCTCCAACACGTGATGTGAAACCACGAAGCCGCTCAAAATCA
AACGATAGAGAAAGTAAAATGGAAATGTTCACCTTCGAAAAGGCAGCATG
ACACCATTCCCTATGGAAGCAGCAGTTCATTAAGAAAGTTCATCAAAACA
ATTAAGTCGTTCTTCAAGTATACGATCGATTCCGTCGACACCTGCACTAA
GCCGACAACACCCGTTACCCGAGCTTCAATCAAGAGCGAAATCGCCTTCT
GCTTCACCTGGGAGAAGCCCTGCTCACAGGAATAGTCACGAGAAAGAAAA
ATACAAAACGAAAAACTCAAAAGGAAGCATTAAATCTACGCCAAGCCCAG
TTAGCAAATTATACACCTTCACGACTGTCAATGATTCATTTGCAACGTCG
CCGCTAGATGTATTCCAACCTACCAAAAGAATTTCAAGAAATCGCAAGGC
GTTTGGCAAGACAGGATCGCGAGCTTAAAAAGAGTGAATCCGACCTCCGT
GGAAGATCAAATTCACGAAAAAGTAGTCGTATGACGAGTAGAGCTTCTAG
TCTATCTCCAACACGTGATGTGAAACCACGAAGCCGCTCAAAATCAAACG
ATAGAGAAAGTAAAATGGAAATGTTCACCTTCGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044492-exon-sc0005677-1575043694:3433..3734 | TCONS_00044492-exon-sc0005677-1575043694:3433..3734 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1575043694:2604..2877 | TCONS_00044492-exon-sc0005677-1575043694:2604..2877 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1575043694:1307..1705 | TCONS_00044492-exon-sc0005677-1575043694:1307..1705 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1510915933:3433..3734 | TCONS_00044492-exon-sc0005677-1510915933:3433..3734 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1510915933:2604..2877 | TCONS_00044492-exon-sc0005677-1510915933:2604..2877 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1510915933:1307..1705 | TCONS_00044492-exon-sc0005677-1510915933:1307..1705 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1491911889:3433..3734 | TCONS_00044492-exon-sc0005677-1491911889:3433..3734 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1491911889:2604..2877 | TCONS_00044492-exon-sc0005677-1491911889:2604..2877 | Clytia hemisphaerica | exon |
| TCONS_00044492-exon-sc0005677-1491911889:1307..1705 | TCONS_00044492-exon-sc0005677-1491911889:1307..1705 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005677 | supercontig | sc0005677:1307..3734 - |
Blast
The following BLAST results are available for this feature:
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