TCONS_00044493 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044493
Unique NameTCONS_00044493
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044493 ID=TCONS_00044493|Name=TCONS_00044493|organism=Clytia hemisphaerica|type=transcript|length=828bp
AATGGTGACGACAATAGAAAAGGAGTAAAAACAACTGAGTagaaaatgac
tttaaaaaacGATTGGATGGCTTTTTGCAGCTGAACCAAATTTTCACTGG
CGTTGATGCTCTTTGCAGGTTTTATGCGAATAACAGCCAACGAGCGACAG
CAACAGCAACAGCAGCCAAAAAACGGTGACGACAATAGAATAGTAAAAAT
GATAGTAAAAAACAACTGAGTAGAAAATGACTTTAAAACAACGATTGGAT
GGCTTTTTGCAGCTGAACCAAATTTTCACTGGCGTTGATGCTCTTTGCAG
GTTTTATGCGAATAACAGCCAACGAGCGACAGCAACAGCAACAGCAGCCA
AAAAACGGTGACGACAATAGAATAGTAAAAATGATAGTAAAAAACAACTG
AGTAGAAAATGACTTTAAAACAACGATTGGATGGCTATTTGCAGCTGAAC
CAAATTTTCACTGGCGTTGATGCTTCGATTCACTTTCATCAAAACACAGG
AACATGTTCAATTTCTTTCACCATCTCAATATGTCTTTAATGCTTGACCA
GACCACAACAATAACCAGGGAAATTATCAATTaccaaaaaacaacttttt
gtggTGAATAGCACATTCTATATTTTCACATGTGTATCAGGGAAAAATTC
GGTGAACATACGGCATGTAAATATTCATCTTATAAGACATGTGATAAAGA
AGGGAATgatttttcaattaaattctACTTAATTCAATTCATTTCAGAAC
TAGTTGGTAAACATTGTGTGTTGAAAAAAAGCTCTGGAATTTAGCAAATT
TCTCAATCATAGTTTGATGGGACATTTC
Run BLAST on NCBI

transcript from alignment at sc0005678:2653..3812+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044493 ID=TCONS_00044493|Name=TCONS_00044493|organism=Clytia hemisphaerica|type=transcript|length=1160bp|location=Sequence derived from alignment at sc0005678:2653..3812+ (Clytia hemisphaerica)
AATGGTGACGACAATAGAAAAGGAGTAAAAACAACTGAGTagaaaatgac
tttaaaaaacGATTGGATGGCTTTTTGCAGCTGAACCAAATTTTCACTGG
CGTTGATGCTCTTTGCAGGTTTTATGCGAATAACAGCCAACGAGCGACAG
CAACAGCAACAGCAGCCAAAAAACGGTGACGACAATAGAATAGTAAAAAT
GATAGTAAAAAACAACTGAGTAGAAAATGACTTTAAAACAACGATTGGAT
GGCTTTTTGCAGCTGAACCAAATTTTCACTGGCGTTGATGCTCTTTGCAG
GTTTTATGCGAATAACAGTCAACGAGCGACAGCAACAGCAACAACAGCCA
AAAAACGGTGACGACAATAGAATAGTAAAAATGATAGTAAAAAACAACTG
AGTaaaaaatgactttaaaaaacGATTGGATGGCTTTTTGCAGCTGAACC
AAATTTTCACTGGCGTTGATGCTCTTTGCAGGTTTTATGCGAATAACAGC
CAACGAGCGACAGCAACAGCAACAGCAGCCAAAAAACGGTGACGACAATA
GAATAGTAAAAATGATAGTAAAAAACAACTGAGTAGAAAATGACTTTAAA
ACAACGATTGGATGGCTATTTGCAGCTGAACCAAATTTTCACTGGCGTTG
ATGCTTCGATTCACTTTCATCAAAACACAGGAACATGTTCAATTTCTTTC
ACCATCTCAATATGTCTTTAATGCTTGACCAGACCACAACAATAACCAGG
GAAATTATCAATTaccaaaaaacaactttttgtggTGAATAGCACATTCT
ATATTTTCACATGTGTATCAGGGAAAAATTCGGTGAACATACGGCATGTA
AATATTCATCTTATAAGACATGTGATAAAGAAGGGAATgatttttcaatt
aaattctACTTAATTCAATTCATTTCAGAACTAGTTGGTAAACATTGTGT
GTTGAAAAAAAGCTCTGGAATTTAGTAATTTCTCAAACATAGTTTAATGG
GACATTTCGATCATAAGTTAATTGGGACCAGTGTTCTTGTTTATTCTGTT
AAACGATTTCTCATGTTATCAGAGATGAAAGTTTAANAATAAACATTGTG
TGTTGAAAAAAAGCTCTGGAATTTAGCAAATTTCTCAATCATAGTTTGAT
GGGACATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028122XLOC_028122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044493-exon-sc0005678-1491911889:2653..2952TCONS_00044493-exon-sc0005678-1491911889:2653..2952Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1510915933:2653..2952TCONS_00044493-exon-sc0005678-1510915933:2653..2952Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1575043694:2653..2952TCONS_00044493-exon-sc0005678-1575043694:2653..2952Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1491911889:3134..3595TCONS_00044493-exon-sc0005678-1491911889:3134..3595Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1510915933:3134..3595TCONS_00044493-exon-sc0005678-1510915933:3134..3595Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1575043694:3134..3595TCONS_00044493-exon-sc0005678-1575043694:3134..3595Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1491911889:3747..3812TCONS_00044493-exon-sc0005678-1491911889:3747..3812Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1510915933:3747..3812TCONS_00044493-exon-sc0005678-1510915933:3747..3812Clytia hemisphaericaexon
TCONS_00044493-exon-sc0005678-1575043694:3747..3812TCONS_00044493-exon-sc0005678-1575043694:3747..3812Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005678supercontigsc0005678:2653..3812 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.630461	0.447126	0.389367	0	1.30117	0.610771	0.881724	0.947414	0.482979	0.299124	0.754876	0.30537	0.381181	0.514619	0.18613	0.488963	0.0860517	0.220501	0.487414	0.191266	0.977758	0.324354	0.0657158	0.11949	0.412366	0.943575	0.624678	0.419365	0.190844	0.259253
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044493 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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