TCONS_00044496 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044496
Unique NameTCONS_00044496
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044496 ID=TCONS_00044496|Name=TCONS_00044496|organism=Clytia hemisphaerica|type=transcript|length=690bp
aatgaaatatgtAATATGTATTTTACTGAATCAACACTTTAACCTAATCA
AACTGAACTAACTGAGGACACTTAGCGCCCCAAAAAAGGTCCCTTAATGT
CATTTCTACTAGTACGAGGTTTTGCATGCATCTGTTGCCTCTTTGTTATC
GTTGTTATCCTTGcgtttatatttcttttgtttaaatgtTCACTCGTTAG
tctatttcttttgttatttcgTGTTTTATTTAATGATACGGTTGATATAA
ACCTTACTCTCGGATACCTAATAGGCTTCCCCGCTAATAATTTCTTACTT
AAATTTTCCACCCGTGTTTACAACTCCCGTGTTTATCAATCTTTGAgaaa
tctttttgaaagtttctttttttgccttttaaattctttttttcactcgg
aacatttttatttcaaatttagtttttagaAGGATTTCTGTTCCAGACCG
CTCTGTACTAGAGTTTTTTGATAAAGCATCCCTTAAAGTTAAAGCGTATA
TCAAAATAtacaataattttctttttgtccCTCGAACGAGCTGAAATATC
TTGATTAAATTGAACAACATTCATAACGAGTAAACAGTGTGTCCAGAAGA
AAGTGGAACAGAATCTACACAAAgataaacttttttattttttgtgatgt
aatttctaaatttcttttctgAAAAGCTATTGTAATTGCC
Run BLAST on NCBI

transcript from alignment at sc0005684:3120..3809

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044496 ID=TCONS_00044496|Name=TCONS_00044496|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at sc0005684:3120..3809 (Clytia hemisphaerica)
GGCAATTACAATAGCTTTTcagaaaagaaatttagaaattacatcacaaa
aaataaaaaagtttatcTTTGTGTAGATTCTGTTCCACTTTCTTCTGGAC
ACACTGTTTACTCGTTATGAATGTTGTTCAATTTAATCAAGATATTTCAG
CTCGTTCGAGggacaaaaagaaaattattgtaTATTTTGATATACGCTTT
AACTTTAAGGGATGCTTTATCAAAAAACTCTAGTACAGAGCGGTCTGGAA
CAGAAATCCTtctaaaaactaaatttgaaataaaaatgttccgagtgaaa
aaaagaatttaaaaggcaaaaaaagaaactttcaaaaagatttcTCAAAG
ATTGATAAACACGGGAGTTGTAAACACGGGTGGAAAATTTAAGTAAGAAA
TTATTAGCGGGGAAGCCTATTAGGTATCCGAGAGTAAGGTTTATATCAAC
CGTATCATTAAATAAAACAcgaaataacaaaagaaatagaCTAACGAGTG
AacatttaaacaaaagaaatataaacgCAAGGATAACAACGATAACAAAG
AGGCAACAGATGCATGCAAAACCTCGTACTAGTAGAAATGACATTAAGGG
ACCTTTTTTGGGGCGCTAAGTGTCCTCAGTTAGTTCAGTTTGATTAGGTT
AAAGTGTTGATTCAGTAAAATACATATTacatatttcatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028125XLOC_028125Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044496-exon-sc0005684-1491911889:3120..3809TCONS_00044496-exon-sc0005684-1491911889:3120..3809Clytia hemisphaericaexon
TCONS_00044496-exon-sc0005684-1510915933:3120..3809TCONS_00044496-exon-sc0005684-1510915933:3120..3809Clytia hemisphaericaexon
TCONS_00044496-exon-sc0005684-1575043694:3120..3809TCONS_00044496-exon-sc0005684-1575043694:3120..3809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005684supercontigsc0005684:3120..3809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147517	0.143852	0.167026	0	0.497336	0.314401	0.568968	0.532661	0.372928	0.230966	0.448362	0.540349	0.490543	0.254717	0.293177	0.494409	0.22148	0	0.392034	0.164094	1.14102	1.46094	0.507419	0.384431	0.079191	0.282704	0.303412	0.647619	0.081866	0.417042
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044496 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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