TCONS_00044565 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044565
Unique NameTCONS_00044565
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length324

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044565 ID=TCONS_00044565|Name=TCONS_00044565|organism=Clytia hemisphaerica|type=transcript|length=324bp
ctccctgcaggcgagttacctgcaccaagcgttaaaccagcagcaaaaat
atcataaactagactgtgaaaaaagtttaacgcttggattcccaggctac
atcAAAGCCAGCTaaatcttgtttttaattttcacaactGTAGTGGCAAC
TTATTGGGAAGCTAATACATTTAGCAGAAAAATCATGCTATCATGAATAC
AGAGATAGCGCATTATTCGGGAGATAAAAGAAGCTGATGCAATAATCCCA
ATGGCTGATGCAATCGCGCGCGGTTTTTATCCCGGTGTTTACTCGAAAAG
AAATCCGTGCaaatatcgggaaat
Run BLAST on NCBI

transcript from alignment at sc0005799:116..439

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044565 ID=TCONS_00044565|Name=TCONS_00044565|organism=Clytia hemisphaerica|type=transcript|length=324bp|location=Sequence derived from alignment at sc0005799:116..439 (Clytia hemisphaerica)
atttcccgatatttGCACGGATTTCTTTTCGAGTAAACACCGGGATAAAA
ACCGCGCGCGATTGCATCAGCCATTGGGATTATTGCATCAGCTTCTTTTA
TCTCCCGAATAATGCGCTATCTCTGTATTCATGATAGCATGATTTTTCTG
CTAAATGTATTAGCTTCCCAATAAGTTGCCACTACagttgtgaaaattaa
aaacaagatttAGCTGGCTTTgatgtagcctgggaatccaagcgttaaac
ttttttcacagtctagtttatgatatttttgctgctggtttaacgcttgg
tgcaggtaactcgcctgcagggag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028184XLOC_028184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044565-exon-sc0005799-1491911889:116..439TCONS_00044565-exon-sc0005799-1491911889:116..439Clytia hemisphaericaexon
TCONS_00044565-exon-sc0005799-1510915933:116..439TCONS_00044565-exon-sc0005799-1510915933:116..439Clytia hemisphaericaexon
TCONS_00044565-exon-sc0005799-1575043694:116..439TCONS_00044565-exon-sc0005799-1575043694:116..439Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005799supercontigsc0005799:116..439 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777451	0.524148	0.65937	1.19823	4.10909	1.39686	2.48556	5.15424	2.0574	4.26374	3.0469	2.3316	0.569248	1.33684	1.08127	1.24029	1.39192	1.93887	2.70924	2.20415	0.838183	1.53933	0.907591	0.452209	0.904939	3.02245	0.483859	0	0	0.575696
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044565 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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