TCONS_00044576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044576
Unique NameTCONS_00044576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044576 ID=TCONS_00044576|Name=TCONS_00044576|organism=Clytia hemisphaerica|type=transcript|length=459bp
tgccaattacccccaagtaataagaatgctgtaagaatattttaggatga
ttttcccaaaaaatttaagaatatccatgatgaaatggatttaccccatt
cttataaaaaaaaaagcgtgtatcaatACGACGATGAAACTGTTTGAACA
CATGTGGAATGAAATGGATATCGAGGAATTCAACAAGCAATCAGCGGCAA
AGTTTAAGCAGACATCTTCAAAACAAGGAACAATTTTCAAGAGATAAAAA
TTGGtttgaatatttgaaagaaaatttttttatacatTATTTTAGAATAA
CAGAATAAATACAAATAAATGAGCGTATACAATAAATTGAACATTTACTG
CTAAAAACTACCATGTCCTGGGAAACGTTTTAACAAAAAGTGTCCTATCT
TTTGATCATTTGCGAAAAAGTCGgttctatcaaatttttttacaatgtcA
GACAATCTT
Run BLAST on NCBI

transcript from alignment at sc0005818:10..468

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044576 ID=TCONS_00044576|Name=TCONS_00044576|organism=Clytia hemisphaerica|type=transcript|length=459bp|location=Sequence derived from alignment at sc0005818:10..468 (Clytia hemisphaerica)
AAGATTGTCTgacattgtaaaaaaatttgatagaacCGACTTTTTCGCAA
ATGATCAAAAGATAGGACACTTTTTGTTAAAACGTTTCCCAGGACATGGT
AGTTTTTAGCAGTAAATGTTCAATTTATTGTATACGCTCATTTATTTGTA
TTTATTCTGTTATTCTAAAATAatgtataaaaaaattttctttcaaatat
tcaaaCCAATTTTTATCTCTTGAAAATTGTTCCTTGTTTTGAAGATGTCT
GCTTAAACTTTGCCGCTGATTGCTTGTTGAATTCCTCGATATCCATTTCA
TTCCACATGTGTTCAAACAGTTTCATCGTCGTattgatacacgctttttt
ttttataagaatggggtaaatccatttcatcatggatattcttaaatttt
ttgggaaaatcatcctaaaatattcttacagcattcttattacttggggg
taattggca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028195XLOC_028195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044576-exon-sc0005818-1491911889:10..468TCONS_00044576-exon-sc0005818-1491911889:10..468Clytia hemisphaericaexon
TCONS_00044576-exon-sc0005818-1510915933:10..468TCONS_00044576-exon-sc0005818-1510915933:10..468Clytia hemisphaericaexon
TCONS_00044576-exon-sc0005818-1575043694:10..468TCONS_00044576-exon-sc0005818-1575043694:10..468Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005818supercontigsc0005818:10..468 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.423573	0.0476741	1.08056	0.45902	0.566591	1.27026	2.64011	4.28842	0	0.521483	0.984353	0.309227	1.55079	2.97788	0.900471	0.822075	0	0.478888	0	0	1.18868	0.986111	0	0.885545	1.29659	2.13399	1.24408	2.03124	1.34458	0.774679
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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