TCONS_00044583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044583
Unique NameTCONS_00044583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length289

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044583 ID=TCONS_00044583|Name=TCONS_00044583|organism=Clytia hemisphaerica|type=transcript|length=289bp
AGATGACTTCTACGATGACATCATGAACCACGTTAATAATAAACCTGTTA
TTCAACCCACCATCGATACGGCCCCCAAACCGCTAAATCAACAAGgaaat
aCAGAAGGTGCACAAGGCGAAGAAATATATGATGACGTAGTACAACCAAC
AGAACAAGATGACGGTGGAGaaatttatgatgacgtcagtaACCAAGTTC
AAACACCGACGCCCGCAGTACGCCCACAACCGCCTACTCCGATGGGTGGA
ATCACCCATACCTCTCCTCAACTAATGAATAGTCCAGGT
Run BLAST on NCBI

transcript from alignment at sc0005832:962..3334-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044583 ID=TCONS_00044583|Name=TCONS_00044583|organism=Clytia hemisphaerica|type=transcript|length=2373bp|location=Sequence derived from alignment at sc0005832:962..3334- (Clytia hemisphaerica)
AGATGACTTCTACGATGACATCATGAACCACGTTAATAATAAACGTAAGT
AAACAAATTTTGACTTTATTCCAAAAGGCTGTTCTATTTAATTTCCATAC
AGGGGAGGGGGTGAGGTGGAAGAACTATTTCAAGCTAAAAGAAATCTTCA
AAATATGTGGCTACCCCCTAGAATATTGTAAAATTTGCTACAAAACCTTG
GAAAATTCCTTTCTTCAAGCGAGTGTATCAACCTTATACCTTAAAGAAGG
TGGACGAACTAAAATTAGTCTTTTACCCAATGGAACTTTTAGAATAATTT
TTTACCCCCTGGAAAAATAAAAAGAATTCTGGAAATTCTTCTCATATTAC
CCCCTTAAAAATGCTCGTCCGCCCCCTGTATGGATATAAAATGAAATGGC
CTAATTAATGCGTTGAAATTAGATAAAGAATTTTTCTGCTCCTCTACATA
GTGTCTGCCCCTACTCTAAGATTCTCAAATAAACAAACAAGCCTTGATTC
TTTTCATAAAACAAAATTGGTATTACAAACAACGTGTATTCAGCACAGAT
TTATAAAGCCCGAAGGGCTAGTCGTGCTTTAAGCTCTTCCAAGCAAAAAA
AGTGAATATCGGAAAAAATAATTTTTCAAAATAATTTTTCTTTTCAAAAG
TTGTATAGAACTGCTAAAACCCATAAGTTTGATGACATATCAACAATTAC
CGTAGATAAGTTGAAATTCAGACATTTAAGCGCCCAAACAGGAACATGTA
CGTATAATGCTGCAAAAGTGATCTCGAATTACCGGAAAAAATATTGTTGC
TATTGTTTTCGAAAACCTGCAAAGCTTCTGATTGGTCAAGCGCTGAAATT
CTATTGTAATGTCACGTGATCTGAGTAGAATTTCCCACCTACTTTCCTAC
TAACCTCGGCACGCTTTATAGAAGAAGCACGACATCCACCCCTTTATAAA
TCTATGGTATTCATGTGTGTATTGGTGAAGAACATCCTGTTTTGAAGAAA
GTACTGAAAAAAAGAATTCAAATTTTTCTGTTATGAAAAAAACGTTAGTT
GTCTATAAACAGTCTTTGATTTTAAAGTTTATTGTCATGAAAGAAATATT
ATTTTAGAAAAAACTAATGATATGTTATACGTGTGAGAATACCCTTTGCA
AGGGAAGCTACGAAAGTTTGATTTCCCTGGTTAGAATTCTTCAGAACCCC
ATGATCGAGTTCAGAGTTCTTTTAATCCGGAACAAATTTCAACTTTAATT
TAAAGCGACACAAAAATCTTCTCTTTTTTTAGCTGTTATTCAACCCACCA
TCGATACGGCCCCCAAACCGCTAAATCAACAAGGTAGAGTTTAAGTCCGC
AAAAGCCTTAAAATATTCTTAACTTGTTCTTAATATTTTGGCCCGCCAAA
GCTTTGTTCTTATATAGTTTGTTCTTATCATGTGTGAAGTTGTTGTTTGG
GGCGTTACAGTCATATCAACTGTTTTTGCCCTTATATAGTTTGTTCTTAA
CGTGTAGTCTAAAATGTTATTTCCATTTTCTTAGGAAATACAGAAGGTGC
ACAAGGCGAAGGTAAGACCAAATTTTCTGTATTGAAAATTGAGGGTAAAA
TGATATGTCGATGTTAAAGGGTGCTTTTGACTTCAAACCCCCGCTTAAGG
GGGTTTTGTTATTTTTCAAGACCTAATTTTAGCCACATTTAAAGGTTATA
TAATTAGAATTATTTTTGGTCCTTGAAAAGGTTGAAAAACTTTTTGGTAA
AATGAACCTAACGGTGCAATTTCTTGTTCCTCTAAAGGGTCCTAGTACTA
GAAATATTGTCTTTTATAAAAGAGACTGGGTGGAAATAGTACCTGGGAAG
GTGTTGTCCAGTCCCAATTTGATTTGTTTTCATTCATCAAAATGTTCATT
TTAGGTGCAGTGTTTCTTTAAAGAGCTGTCTTTATTAGGGAAAATGGGTT
TTAGATTTGAATCCTAAGTTATGGTGTTTTTCAAAGGGCGGGGCCGAAAA
AAGGGAAAACTAACGCCAATCATCTTTTTTTATTCTCCATCAGAAATATA
TGATGACGTAGTACAACCAACAGAACAAGATGACGGTGGAGAAATTTATG
ATGACGTCAGTAACCAAGTTCAAAGTAAGTGGCACTTTTTCAAGGAAGAA
AATTTAAAAAGAAATTTTGAAAATTCCCTCATAGCTTTCAATTTCAGTTC
TCTCCGGCAAACTTTAAGCACCCAATCAAATCTTAAATTCTACTGGCTGA
TGGTGATCGTTATTAATTATCTGTCAAATCTTTTTAGCACCGACGCCCGC
AGTACGCCCACAACCGCCTACTCCGATGGGTGGAATCACCCATACCTCTC
CTCAACTAATGAATAGTCCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028202XLOC_028202Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044583-exon-sc0005832-1575043694:3291..3334TCONS_00044583-exon-sc0005832-1575043694:3291..3334Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1575043694:2002..2052TCONS_00044583-exon-sc0005832-1575043694:2002..2052Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1575043694:1774..1800TCONS_00044583-exon-sc0005832-1575043694:1774..1800Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1575043694:1211..1291TCONS_00044583-exon-sc0005832-1575043694:1211..1291Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1575043694:962..1047TCONS_00044583-exon-sc0005832-1575043694:962..1047Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1510915933:3291..3334TCONS_00044583-exon-sc0005832-1510915933:3291..3334Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1510915933:2002..2052TCONS_00044583-exon-sc0005832-1510915933:2002..2052Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1510915933:1774..1800TCONS_00044583-exon-sc0005832-1510915933:1774..1800Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1510915933:1211..1291TCONS_00044583-exon-sc0005832-1510915933:1211..1291Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1510915933:962..1047TCONS_00044583-exon-sc0005832-1510915933:962..1047Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1491911889:3291..3334TCONS_00044583-exon-sc0005832-1491911889:3291..3334Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1491911889:2002..2052TCONS_00044583-exon-sc0005832-1491911889:2002..2052Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1491911889:1774..1800TCONS_00044583-exon-sc0005832-1491911889:1774..1800Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1491911889:1211..1291TCONS_00044583-exon-sc0005832-1491911889:1211..1291Clytia hemisphaericaexon
TCONS_00044583-exon-sc0005832-1491911889:962..1047TCONS_00044583-exon-sc0005832-1491911889:962..1047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005832supercontigsc0005832:962..3334 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13548	2.82971	1.02206	2.58067	4.60203	8.96167	7.85614	10.1583	4.22861	8.23835	10.5479	3.38903	12.5043	9.24382	9.39431	11.6863	5.57128	6.04029	8.91765	9.91757	11.0667	7.15742	6.80425	5.63017	8.91302	7.40884	13.4456	9.38528	9.04955	8.79923
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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