TCONS_00044592 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044592
Unique NameTCONS_00044592
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044592 ID=TCONS_00044592|Name=TCONS_00044592|organism=Clytia hemisphaerica|type=transcript|length=711bp
TTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGTCA
TTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCTT
CGAGAAACTAAGGTGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAAAGTTA
CGGACAAAATGCAATTGATGGAACCATGTTATGCGCTTCTTCTGCTGGAA
AAGATTCTTGTCAAGGGGACAGTGGTGGCCCACTTGTCGAAAGAAAAGCA
AGTCCCAGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGGGG
ATATGGTTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAGTG
CATTGAGAAGCTGGATTGAAGGCAAAGGACTTAAACCAAAACCAGGAACA
CCGGTCACTCCAGGACCAGTAACTCCAGAGCCAGTAACTCCAGGACCGGT
CACTCCAGAACCAGTCACTCCAGGGCCAGATGGTAAGAGAAATACTTTTT
AGAAAGCAGCCAACTCTAGAATAAAAGCTCTTTTGGTGATTGGTCTTTCT
TGCATGTGATAAATTCATCgctaaattatttcatttttttaagaagaaat
ACTATCCTGGATGTTATATGTTataccttaagggctctgaccatagtgaa
tttttcataattgccgtgtttaaaatgtgttttctgactgatgtaaccaa
caaaactatgg
Run BLAST on NCBI

protein sequence of TCONS_00044592-protein

>TCONS_00044592-protein ID=TCONS_00044592-protein|Name=TCONS_00044592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
CVPESGDAPDPNTEVVISGWGTTQSGGSQPNTLRETKVSVVSRSSCRQSY
GQNAIDGTMLCASSAGKDSCQGDSGGPLVERKASPSNGERFYLAGVVSWG
YGCASPGYPGVYADVSALRSWIEGKGLKPKPGTPVTPGPVTPEPVTPGPV
TPEPVTPGPDGKRNTF
Run BLAST on NCBI

transcript from alignment at sc0005856:1..3331+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044592 ID=TCONS_00044592|Name=TCONS_00044592|organism=Clytia hemisphaerica|type=transcript|length=3331bp|location=Sequence derived from alignment at sc0005856:1..3331+ (Clytia hemisphaerica)
TTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGTCA
TTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCTT
CGAGAAACTAAGGTTATTATAATAAAACttattaaccctttcagtcccgg
agttttcacagctactttcccagagccgtaaaatgagtttttgaatgcat
ttacttatgcttcaatatctctggaatcacaccctttttcacttatagta
tgaggatcattttgatagaaagaaatttgcaaaatgacgtcatcagcgtg
tcacgtgaccggagaaaggcaaaaaaagatttgaaaacagcaattttttt
ccattcatcaatgatatttttttatgaaaaaatggtTTAAACCCATTCAT
TCTTCTGGTAAATGTTTGGCACAACAGTATCTActaactaaaaaaaaaat
tgcgtttgattagccctcatagaaaaatcataatgattggtagaagttgt
aaaaaatcccattttcggCCTTACAGATTTTGATTGCAAAactttttgta
aatacttttgtaaacaaaaccttttactcgaacaagctttttttacgCGG
TTTTTTGCACACGACGCGGTATCttatcttctttgaaagctAATTAAAGA
CATATCTCTTTATTTCCCGTCAAAacatcacaatttgaaaaagaagtcCC
GCTGTGCAGTCCTCTGGGAAAAATCGACGAGTCCAAAGGGACTGCAGTGC
GGTCgcctgggactgaaagggttaaccCTTACTTaagctctttttgtttt
aaatgtgcTCTATATTGTTTTGCTTCTTCAACATATGCTTAGATAATATA
CTGTTGGAAATAAAGTTCGAAGTAATacaatttttgagaaagatggttgc
aaaatgttttcgaaataaatcattCTTCAATTTGAGAATGAAGGAGAAAA
GTGAAggacaaaaaaaatactttatttCATTTGGCGAGTTTTACAATGAA
TACGATGTTCTgctcttcataaaaaaatatccatatgcCTTTAATTAAAT
GTATGTATAGCATGGATGTTATGGATCCTTGTTTTGTTTGCTTAATTAAC
AATGTGCATTCACGCTGTATAATCTAGAGCGTGATTTGCTTTAACAATAT
TTATTTGGCACTGCGAAATTCACGATGCGGCTATTGTACTGTTTGGagtt
tttgacaaatttctcattttttttattctttctacATAGGTGTCTGTTGT
AAGCAGAAGCAGTTGCCGGCAAAGTTACGGACAAAATGCAATTGATGGAA
CCATGTTATGCGCTTCTTCTGCTGGAAAAGATTCTTGTCAAGTGAGTTTT
TACAAAGCCCATAACCATTCCCAGATAGATATTTCTACACAGTCGAATCT
cttaattttggctgaaaaggAAAGTACCCCTGGCACCCCACATTTGGGTT
TTGATCGCTAGTTTCAGGCAATTTAAGTGAAGGGTTCTATTTTCGAATAT
ACATTGATTCCTTTAAAATTCTCCCTAGAAAAGAAACTTGAAcatttatt
aaatttattaAACTGTGAtcgtttttgcttgaaatgttggAAATAATTCT
TTTCTCTATGTGAGTACAACTGGATTGCAAAATCTATATAACATTTCAGA
AACAGAAGTTTATGAATAAATTGTTTTAcctattctttattttttttcta
atttacaGGGGGACAGTGGTGGCCCACTTGTCGAAAGAAAAGCAAGTCCC
AGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGGGGATATGG
TTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAGTGCATTGA
GAAGCTGGATTGAAGGCAAAGGACGTAAGgagaatatatttttattttca
tcttaaaaatgtaaaaaaagtaaaaaaccaAAACTTAATCTTTAAGTAAG
tcagtatattcatctggttgTTGTCGGCGGAGCCGAGGATGAGGAAGTCC
ATCATATTTCTAATACCTCTAGACCTGGGGGTTCGAATCGAATACTGAGG
TGGAGCGCTACACCTACTATCAGCTTCCAATAACTTACCGTCTCGATCAG
ATTATCCAGTCTAAGCTCAGGAAAACATCCGGGGGAGCTCATGGAGGTAC
TTATGGTACGTCCAACTTGGGTTTAATGACTTATTAAGAATatgactttt
taaaaaattatttagagTGCAATtcctgcctcgttttgaaaccattacca
tgGTAATTAAATCCCTTGAGTAACAAAATCACTTGAGTCTTTAAGTGTTA
CTTTTATAAAAAGAGTAAACTTCTTATGAACTCGTGGCCCGGGGGAGGGg
tcactcatatgatctggcctacgtcatgtgccgcgcttaagggtggggtt
tttctgcatcccaaaatgcactgtaagggtgtgtttttgtgagattgcac
tgcaagggtcgaattttaaaacaaattcaaaataattgttaaaaagaaag
gtttttactcctcatttgtttgaaaaagtttctattgtttgataattaca
gctgacaagaatgattttctcagtttttctttgaaacagaaaatttccaa
aGCTTCTTCtcttcacgcagatttacagctaagaaatatagtgcactata
agggttgggtaaatcaagagaaaatgcactgaaagggtaccttttcaccc
ATATTGAACTGcgctgtaagggtacgattttgaaaagcagattttgcgcg
gcacataccgtcgtttcaaaatcgagtgcccccccccgggactcGAGGAA
AACGAGGTAAGTGTTAGTTGTgatataatttatgaaaaggtctatcataT
NCCGGGACTCGAGGAAAACGAGGTAAGTGTTAGTTGTgatataatttatg
aaaaggtctatcataTCAAATATTACTGGTTcgactttttcgaatttctA
TATTTTTGATGAGTAGGTTAACTTGCGTACGCTTATTCTTTCTCACACAG
TTAAACCAAAACCAGGAACACCGGTCACTCCAGGACCAGTAACTCCAGAG
CCAGTAACTCCAGGACCGGTCACTCCAGAACCAGTCACTCCAGGGCCAGA
TGGTAAGAGAAATACTTTTTAGAAAGCAGCCAACTCTAGAATAAAAGCTC
TTTTGGTGATTGGTCTTTCTTGCATGTGATAAATTCATCgctaaattatt
tcatttttttaagaagaaatACTATCCTGGATGTTATATGTTatacctta
agggctctgaccatagtgaatttttcataattgccgtgtttaaaatgtgt
tttctgactgatgtaaccaacaaaactatgg

Coding sequence (CDS) from alignment at sc0005856:1..3331+

>TCONS_00044592 ID=TCONS_00044592|Name=TCONS_00044592|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0005856:1..3331+ (Clytia hemisphaerica)
TGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGTCAT
TTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCTTC
GAGAAACTAAGGTGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAAAGTTAC
GGACAAAATGCAATTGATGGAACCATGTTATGCGCTTCTTCTGCTGGAAA
AGATTCTTGTCAAGGGGACAGTGGTGGCCCACTTGTCGAAAGAAAAGCAA
GTCCCAGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGGGGA
TATGGTTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAGTGC
ATTGAGAAGCTGGATTGAAGGCAAAGGACTTAAACCAAAACCAGGAACAC
CGGTCACTCCAGGACCAGTAACTCCAGAGCCAGTAACTCCAGGACCGGTC
ACTCCAGAACCAGTCACTCCAGGGCCAGATGGTAAGAGAAATACTTTTTA
GTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGTCA
TTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCTT
CGAGAAACTAAGGTGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAAAGTTA
CGGACAAAATGCAATTGATGGAACCATGTTATGCGCTTCTTCTGCTGGAA
AAGATTCTTGTCAAGGGGACAGTGGTGGCCCACTTGTCGAAAGAAAAGCA
AGTCCCAGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGGGG
ATATGGTTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAGTG
CATTGAGAAGCTGGATTGAAGGCAAAGGACTTAAACCAAAACCAGGAACA
CCGGTCACTCCAGGACCAGTAACTCCAGAGCCAGTAACTCCAGGACCGGT
CACTCCAGAACCAGTCACTCCAGGGCCAGATGGTAAGAGAAATACTTTTT
AGTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGTC
ATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCCT
TCGAGAAACTAAGGTGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAAAGTT
ACGGACAAAATGCAATTGATGGAACCATGTTATGCGCTTCTTCTGCTGGA
AAAGATTCTTGTCAAGGGGACAGTGGTGGCCCACTTGTCGAAAGAAAAGC
AAGTCCCAGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGGG
GATATGGTTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAGT
GCATTGAGAAGCTGGATTGAAGGCAAAGGACTTAAACCAAAACCAGGAAC
ACCGGTCACTCCAGGACCAGTAACTCCAGAGCCAGTAACTCCAGGACCGG
TCACTCCAGAACCAGTCACTCCAGGGCCAGATGGTAAGAGAAATACTTTT
TAGTGTGTACCAGAAAGTGGCGATGCACCAGATCCAAATACAGAAGTTGT
CATTTCTGGCTGGGGAACAACTCAGTCTGGAGGAAGTCAGCCCAACACCC
TTCGAGAAACTAAGGTGTCTGTTGTAAGCAGAAGCAGTTGCCGGCAAAGT
TACGGACAAAATGCAATTGATGGAACCATGTTATGCGCTTCTTCTGCTGG
AAAAGATTCTTGTCAAGGGGACAGTGGTGGCCCACTTGTCGAAAGAAAAG
CAAGTCCCAGTAATGGAGAACGTTTTTATTTGGCTGGTGTTGTTAGCTGG
GGATATGGTTGCGCAAGCCCTGGCTATCCAGGAGTTTATGCAGATGTTAG
TGCATTGAGAAGCTGGATTGAAGGCAAAGGACTTAAACCAAAACCAGGAA
CACCGGTCACTCCAGGACCAGTAACTCCAGAGCCAGTAACTCCAGGACCG
GTCACTCCAGAACCAGTCACTCCAGGGCCAGATGGTAAGAGAAATACTTT
TTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028211XLOC_028211Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044592-exon-sc0005856-1491911889:1..112TCONS_00044592-exon-sc0005856-1491911889:1..112Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1510915933:1..112TCONS_00044592-exon-sc0005856-1510915933:1..112Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1575043694:1..112TCONS_00044592-exon-sc0005856-1575043694:1..112Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1491911889:1240..1341TCONS_00044592-exon-sc0005856-1491911889:1240..1341Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1510915933:1240..1341TCONS_00044592-exon-sc0005856-1510915933:1240..1341Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1575043694:1240..1341TCONS_00044592-exon-sc0005856-1575043694:1240..1341Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1491911889:1709..1874TCONS_00044592-exon-sc0005856-1491911889:1709..1874Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1510915933:1709..1874TCONS_00044592-exon-sc0005856-1510915933:1709..1874Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1575043694:1709..1874TCONS_00044592-exon-sc0005856-1575043694:1709..1874Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1491911889:3001..3331TCONS_00044592-exon-sc0005856-1491911889:3001..3331Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1510915933:3001..3331TCONS_00044592-exon-sc0005856-1510915933:3001..3331Clytia hemisphaericaexon
TCONS_00044592-exon-sc0005856-1575043694:3001..3331TCONS_00044592-exon-sc0005856-1575043694:3001..3331Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044592-proteinTCONS_00044592-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005856supercontigsc0005856:1..3331 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.560751	0.688435	0.81585	0.572999	0.996764	0.552115	2.44665	1.80501	1.10454	1.33932	2.1934	0.976565	351.439	257.48	0.6883	0.79533	1.22912	1.35001	600.043	1547.85	1.7531	2.20953	2.60244	2.04552	0.078808	0.285146	1.34708	2.31506	2.19691	2.04368
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001254Trypsin_dom
IPR033116TRYPSIN_SER
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
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BLAST of TCONS_00044592 vs. Swiss-Prot (Human)
Match: TM11E (Transmembrane protease serine 11E OS=Homo sapiens GN=TMPRSS11E PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 8.875e-17
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 2 
Query:    2 CVPESGDAPDPNTEVVIXXXXXXXXXXXXPNTLRETKXXXXXXXXCRQSYGQN-AIDGTMLCASSA-GK-DSCQGDSGGPLVERKASPSNGERFYLAGVVSWGYGCASPGYPGVYADVSALRSWI 367
            C+P++     P   + ++G+G  ++ G   N LR+ +V+++  ++C +    N AI   MLCA S  GK D+CQGDSGGPLV   A     + +YLAG+VSWG  CA P  PGVY  V+ALR WI
Sbjct:  297 CLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQGDSGGPLVSSDAR----DIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWI 417
The following BLAST results are available for this feature:
BLAST of TCONS_00044592 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM11E8.875e-1743.20Transmembrane protease serine 11E OS=Homo sapiens ... [more]
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