TCONS_00044623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044623
Unique NameTCONS_00044623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1177

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044623 ID=TCONS_00044623|Name=TCONS_00044623|organism=Clytia hemisphaerica|type=transcript|length=1177bp
CGAAGGGGCCTTTCAAGAGGAACTTtccgtgtgtctgtctgtcCTGTCCT
GTCTGTCCGCAGTCCGTGCCGTGTTCTGTTTTTCTGTCCTCTCACTTCTA
TCCGTGCTGTGTTTGCTCCTTGCACtctcttttctattttgtaagcTTTC
GCGCTCTTTACATTTACAACTTCAACACCAGGCGCTTCGACTCCTTCCTT
GGAAACATGAAGAAGAAGTTTGGGAATGAACTTGTTCCTTCAAAGACTTT
GTGCATTAGGACATCCTGATGAATCAGTCTAAAATTCACACTGCAGACAC
GTTTTGCCACTTATAAATATTTACATACGTTTGCTGTTATTTGATCCATA
TTAATATTTTGTCATATCCATATTGTTGCTGATCGACCAGTAATTCTTCA
TATTATTCATCAGCTATCACTGTTATTGGAATTATCCAAGCTGCAAGGCG
CTCGATCGGGCAAGTCAAAAATTTGTGTCGGGCAACCATCATGCATCAAT
AATATGTTCTGTTCACGTTgcccgattttcaaaacataaatcccAAGTCG
GCCCAATCACaatgtcagaaaattttttgaatagccAAGCCCTTTTCTAC
ATCACCATTCGCTTCAAgttttcacttcacccaccacACCACAGCACAGA
TGATGTTACGCAAGGAAATCGTCACAAGCCATAATGCGCGTTcagcagat
tttgaaaatgaaagtgtaaAGAATAAACATTGCTGAAACGAGTTTAAAAC
GCGGGTAAAAAGTCCTTGGCTGGTTTGTGAgcctttgaaatttgtttatt
ttgtattctGATTGCTCTCTCATGATGCCccgccattatgaaattttttt
ttgtgtctGCTAAATGCAATTTTGGGATACTTTGCATTACCAACTTTTGC
TTGCGGCAAACACTTTGCCACATTGAGTCccatttaagttttttttcgtC
CACCTTCATTGAAATTATCAACTTGAAATTCACTGACATGATCGAGCCAA
CTGACTGGATTTGGGGATATTTTATAACGCAAACGGAACATATTATTGAT
ATACGCTTAAGCAACAACCAGCAGCAAgacagaaaaatttaaacacaGAT
TCTGTCCTTGCATCTTTGAAAATGGCTGATAGAACTAAACAAGGATTGAC
AACCAGCTTATTAGCGTTTTTTGATTG
Run BLAST on NCBI

transcript from alignment at sc0005898:1548..2944-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044623 ID=TCONS_00044623|Name=TCONS_00044623|organism=Clytia hemisphaerica|type=transcript|length=1397bp|location=Sequence derived from alignment at sc0005898:1548..2944- (Clytia hemisphaerica)
CGAAGGGGCCTTTCAAGAGGAACTTTCCGTGTGTCTGTCTGTCCTGTCCT
GTCTGTCCGCAGTCCGTGCCGTGTTCTGTTTTTCTGTCCTCTCACTTCTA
TCCGTGCTGTGTTTGCTCCTTGCACTCTCTTTTCTATTTTGTAAGCTTTC
GCGCTCTTTACATTTACAACTTCAACACCAGGCGCTTCGACTCCTTCCTT
GGAAACATGAAGAAGAAGTTTGGGAATGAACTTGTTCCTTCAAAGACTTT
GTGCATTAGGACATCCTGATGAATCAGTCTAAAATTCACACTGCAGACAC
GTTTTGCCACTTATAAATATTTACATACGTTTGCTGTTATTTGATCCATA
TTAATATTTTGTCATATCCATATTGTTGCTGATCGACCAGTAATTCTTCA
TATTATTCATCAGCTATCACTGTTATTGGAATTATCCAAGCTGCAAGGTA
TGTAAATGTGTTATTATACTGTTGCTAATGAATCGAAAGTTTAGCTTTAT
AGTTTGATTAAAACTGTTTTCTCAAGAAGTCCATCATATTTTGTAACCTT
CTGGTGGAAAAGCTTTCACTTAAGATCGCCAATAGAGCACACTGTGCGTT
TTACATACAGTATGTAGCTTAATCGAGCAACCAGTGACTGTCTGAAAAAC
CGCTATTTTACTTACAGGCGCTCGATCGGGCAAGTCAAAAATTTGTGTCG
GGCAACCATCATGCATCAATAATATGTTCTGTTCACGTTGCCCGATTTTC
AAAACATAAATCCCAAGTCGGCCCAATCACAATGTCAGAAAATTTTTTGA
ATAGCCAAGCCCTTTTCTACATCACCATTCGCTTCAAGTTTTCACTTCAC
CCACCACACCACAGCACAGATGATGTTACGCAAGGAAATCGTCACAAGCC
ATAATGCGCGTTCAGCAGATTTTGAAAATGAAAGTGTAAAGAATAAACAT
TGCTGAAACGAGTTTAAAACGCGGGTAAAAAGTCCTTGGCTGGTTTGTGA
GCCTTTGAAATTTGTTTATTTTGTATTCTGATTGCTCTCTCATGATGCCC
CGCCATTATGAAATTTTTTTTTGTGTCTGCTAAATGCAATTTTGGGATAC
TTTGCATTACCAACTTTTGCTTGCGGCAAACACTTTGCCACATTGAGTCC
CATTTAAGTTTTTTTTCGTCCACCTTCATTGAAATTATCAACTTGAAATT
CACTGACATGATCGAGCCAACTGACTGGATTTGGGGATATTTTATAACGC
AAACGGAACATATTATTGATATACGCTTAAGCAACAACCAGCAGCAAGAC
AGAAAAATTTAAACACAGATTCTGTCCTTGCATCTTTGAAAATGGCTGAT
AGAACTAAACAAGGATTGACAACCAGCTTATTAGCGTTTTTTGATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028241XLOC_028241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044623-exon-sc0005898-1575043694:2498..2944TCONS_00044623-exon-sc0005898-1575043694:2498..2944Clytia hemisphaericaexon
TCONS_00044623-exon-sc0005898-1575043694:1548..2277TCONS_00044623-exon-sc0005898-1575043694:1548..2277Clytia hemisphaericaexon
TCONS_00044623-exon-sc0005898-1510915933:2498..2944TCONS_00044623-exon-sc0005898-1510915933:2498..2944Clytia hemisphaericaexon
TCONS_00044623-exon-sc0005898-1510915933:1548..2277TCONS_00044623-exon-sc0005898-1510915933:1548..2277Clytia hemisphaericaexon
TCONS_00044623-exon-sc0005898-1491911889:2498..2944TCONS_00044623-exon-sc0005898-1491911889:2498..2944Clytia hemisphaericaexon
TCONS_00044623-exon-sc0005898-1491911889:1548..2277TCONS_00044623-exon-sc0005898-1491911889:1548..2277Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005898supercontigsc0005898:1548..2944 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440597	0	4.98439e-05	0.619967	3.99427	1.98975	3.03016	1.93222	0.540695	1.24238	0.489439	0.924917	0.640558	0.625492	0.589641	0.841267	1.21286	1.25239	0.647815	0.619302	1.33925	0.817628	1.06498	1.21855	0.787649	0.771593	1.8787	1.58634	0.744275	0.890584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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