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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044634 ID=TCONS_00044634|Name=TCONS_00044634|organism=Clytia hemisphaerica|type=transcript|length=777bp
AATTCAGCAAACAGCTTAACGAATTGTTTGACATAATTGgTCCACAAGAA
AGgttaaaacaacaagaaacaacCTGGGGAGTCAAAATGTGCCAAGATGA
CTGGACATTTTACAATAACCAAAAACAAATCCCACGAGAAGGGTTTTGTA
CCAGTTTCACTGATAGACAATGGGAAATCAGCAACAACCGCAAATTGGAA
AGAATGAACAGATCACTTAACCAGTCATACCCTgaagattattttgaaaa
acaagatGCTTGTTCTGATGAAGAAGAGATGGATTGTGAAGACTCACTTG
ATCCAGACTTTAACCCTGAAGAACCTGAAAAGAaacgaccaaaatttcaa
tatgtTCCTGTCTATGACCATTCCAATGATGATCCACTTCCATTTGAGTA
CAGGCATATCCGGAGTGGCCTCCATAGTGTTCGTCCAGAGTACTACATCT
TGATTGAAAAGTTTATATCAGTCTATCATATGTCTTATGAGCAAGCTGAG
GCAGCTGTAAGAGAAACCGCTAACGATCTGTTTGACagaaagaaatatgg
aaagtggAAATCCTACAGCAGGGAACAAGATATTGACAATAATACACTAC
CGATGAAGAAAAACTATCGTGTCAACTCAAAGCTCTTTGAAGCTATGGCT
TTGAGTCTACTTGTTGAAGATATAATGTTAGATGAAACAAATAGCACATG
CATCGTTTATTCCTATGATGGGTCAGGAATGAATAAGGTTGGCAATTATG
TTGTTCAATCTCTTTCGATAAATGGAG Run BLAST on NCBI protein sequence of TCONS_00044634-protein >TCONS_00044634-protein ID=TCONS_00044634-protein|Name=TCONS_00044634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
FSKQLNELFDIIGPQERLKQQETTWGVKMCQDDWTFYNNQKQIPREGFCT
SFTDRQWEISNNRKLERMNRSLNQSYPEDYFEKQDACSDEEEMDCEDSLD
PDFNPEEPEKKRPKFQYVPVYDHSNDDPLPFEYRHIRSGLHSVRPEYYIL
IEKFISVYHMSYEQAEAAVRETANDLFDRKKYGKWKSYSREQDIDNNTLP
MKKNYRVNSKLFEAMALSLLVEDIMLDETNSTCIVYSYDGSGMNKVGNYV
VQSLSING Run BLAST on NCBI transcript from alignment at sc0005911:1594..2764+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044634 ID=TCONS_00044634|Name=TCONS_00044634|organism=Clytia hemisphaerica|type=transcript|length=1171bp|location=Sequence derived from alignment at sc0005911:1594..2764+ (Clytia hemisphaerica)
AATTCAGCAAACAGCTTAACGAATTGTTTGACATAATTGGtaagattttc
ttttattgtcaGTGTAATTAATTGCTAGGGCAAATTCTTTCCTAGCTGAC
AGTGATATCCAATTCAATTCTTCGCAATCTTTTGTCAAGGTATATAAGTT
TAGTTCAATCAATAGACCATAAATTATAGCAGCTTAAAGTttacatttca
aattgattggtgttaaatttcattttaaggTCCACAAGAAAGgttaaaac
aacaagaaacaacCTGGGGAGTCAAAATGTGCCAAGATGACTGGACATTT
TACAATAACCAAAAACAAATCCCACGAGAAGGGTTTTGTACCAGTTTCAC
TGATAGACAATGGGAAATCAGGTATGTTCCTTATGTTTATCAAAATGAAT
CATCCTGTGCctaagttcaggagttgccataaagcacttatggtaataac
cgggagggcacattgctattcattgtaaattaaaattctaAATTGTTATT
agattcaaatttttattacagAATAATTCCAGCGCCCACAATTCTAAATA
CAAATTTTCATCTTCTAAAATTTAGCAACAACCGCAAATTGGAAAGAATG
AACAGATCACTTAACCAGTCATACCCTgaagattattttgaaaaacaaga
tGCTTGTTCTGATGAAGAAGAGATGGATTGTGAAGACTCACTTGATCCAG
ACTTTAACCCTGAAGAACCTGAAAAGAaacgaccaaaatttcaatatgtT
CCTGTCTATGACCATTCCAATGATGATCCACTTCCATTTGAGTACAGGCA
TATCCGGAGTGGCCTCCATAGTGTTCGTCCAGAGTACTACATCTTGATTG
AAAAGTTTATATCAGTCTATCATATGTCTTATGAGCAAGCTGAGGCAGCT
GTAAGAGAAACCGCTAACGATCTGTTTGACagaaagaaatatggaaagtg
gAAATCCTACAGCAGGGAACAAGATATTGACAATAATACACTACCGATGA
AGAAAAACTATCGTGTCAACTCAAAGCTCTTTGAAGCTATGGCTTTGAGT
CTACTTGTTGAAGATATAATGTTAGATGAAACAAATAGCACATGCATCGT
TTATTCCTATGATGGGTCAGGAATGAATAAGGTTGGCAATTATGTTGTTC
AATCTCTTTCGATAAATGGAG Coding sequence (CDS) from alignment at sc0005911:1594..2764+ >TCONS_00044634 ID=TCONS_00044634|Name=TCONS_00044634|organism=Clytia hemisphaerica|type=CDS|length=2322bp|location=Sequence derived from alignment at sc0005911:1594..2764+ (Clytia hemisphaerica)
TTCAGCAAACAGCTTAACGAATTGTTTGACATAATTGgTCCACAAGAAAG
gttaaaacaacaagaaacaacCTGGGGAGTCAAAATGTGCCAAGATGACT
GGACATTTTACAATAACCAAAAACAAATCCCACGAGAAGGGTTTTGTACC
AGTTTCACTGATAGACAATGGGAAATCAGCAACAACCGCAAATTGGAAAG
AATGAACAGATCACTTAACCAGTCATACCCTgaagattattttgaaaaac
aagatGCTTGTTCTGATGAAGAAGAGATGGATTGTGAAGACTCACTTGAT
CCAGACTTTAACCCTGAAGAACCTGAAAAGAaacgaccaaaatttcaata
tgtTCCTGTCTATGACCATTCCAATGATGATCCACTTCCATTTGAGTACA
GGCATATCCGGAGTGGCCTCCATAGTGTTCGTCCAGAGTACTACATCTTG
ATTGAAAAGTTTATATCAGTCTATCATATGTCTTATGAGCAAGCTGAGGC
AGCTGTAAGAGAAACCGCTAACGATCTGTTTGACagaaagaaatatggaa
agtggAAATCCTACAGCAGGGAACAAGATATTGACAATAATACACTACCG
ATGAAGAAAAACTATCGTGTCAACTCAAAGCTCTTTGAAGCTATGGCTTT
GAGTCTACTTGTTGAAGATATAATGTTAGATGAAACAAATAGCACATGCA
TCGTTTATTCCTATGATGGGTCAGGAATGAATAAGGTTGGCAATTATGTT
GTTCAATCTCTTTCGATAAATGGATTCAGCAAACAGCTTAACGAATTGTT
TGACATAATTGgTCCACAAGAAAGgttaaaacaacaagaaacaacCTGGG
GAGTCAAAATGTGCCAAGATGACTGGACATTTTACAATAACCAAAAACAA
ATCCCACGAGAAGGGTTTTGTACCAGTTTCACTGATAGACAATGGGAAAT
CAGCAACAACCGCAAATTGGAAAGAATGAACAGATCACTTAACCAGTCAT
ACCCTgaagattattttgaaaaacaagatGCTTGTTCTGATGAAGAAGAG
ATGGATTGTGAAGACTCACTTGATCCAGACTTTAACCCTGAAGAACCTGA
AAAGAaacgaccaaaatttcaatatgtTCCTGTCTATGACCATTCCAATG
ATGATCCACTTCCATTTGAGTACAGGCATATCCGGAGTGGCCTCCATAGT
GTTCGTCCAGAGTACTACATCTTGATTGAAAAGTTTATATCAGTCTATCA
TATGTCTTATGAGCAAGCTGAGGCAGCTGTAAGAGAAACCGCTAACGATC
TGTTTGACagaaagaaatatggaaagtggAAATCCTACAGCAGGGAACAA
GATATTGACAATAATACACTACCGATGAAGAAAAACTATCGTGTCAACTC
AAAGCTCTTTGAAGCTATGGCTTTGAGTCTACTTGTTGAAGATATAATGT
TAGATGAAACAAATAGCACATGCATCGTTTATTCCTATGATGGGTCAGGA
ATGAATAAGGTTGGCAATTATGTTGTTCAATCTCTTTCGATAAATGGATT
CAGCAAACAGCTTAACGAATTGTTTGACATAATTGgTCCACAAGAAAGgt
taaaacaacaagaaacaacCTGGGGAGTCAAAATGTGCCAAGATGACTGG
ACATTTTACAATAACCAAAAACAAATCCCACGAGAAGGGTTTTGTACCAG
TTTCACTGATAGACAATGGGAAATCAGCAACAACCGCAAATTGGAAAGAA
TGAACAGATCACTTAACCAGTCATACCCTgaagattattttgaaaaacaa
gatGCTTGTTCTGATGAAGAAGAGATGGATTGTGAAGACTCACTTGATCC
AGACTTTAACCCTGAAGAACCTGAAAAGAaacgaccaaaatttcaatatg
tTCCTGTCTATGACCATTCCAATGATGATCCACTTCCATTTGAGTACAGG
CATATCCGGAGTGGCCTCCATAGTGTTCGTCCAGAGTACTACATCTTGAT
TGAAAAGTTTATATCAGTCTATCATATGTCTTATGAGCAAGCTGAGGCAG
CTGTAAGAGAAACCGCTAACGATCTGTTTGACagaaagaaatatggaaag
tggAAATCCTACAGCAGGGAACAAGATATTGACAATAATACACTACCGAT
GAAGAAAAACTATCGTGTCAACTCAAAGCTCTTTGAAGCTATGGCTTTGA
GTCTACTTGTTGAAGATATAATGTTAGATGAAACAAATAGCACATGCATC
GTTTATTCCTATGATGGGTCAGGAATGAATAAGGTTGGCAATTATGTTGT
TCAATCTCTTTCGATAAATGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044634-exon-sc0005911-1491911889:1594..1632 | TCONS_00044634-exon-sc0005911-1491911889:1594..1632 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1510915933:1594..1632 | TCONS_00044634-exon-sc0005911-1510915933:1594..1632 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1575043694:1594..1632 | TCONS_00044634-exon-sc0005911-1575043694:1594..1632 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1491911889:1823..1964 | TCONS_00044634-exon-sc0005911-1491911889:1823..1964 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1510915933:1823..1964 | TCONS_00044634-exon-sc0005911-1510915933:1823..1964 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1575043694:1823..1964 | TCONS_00044634-exon-sc0005911-1575043694:1823..1964 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1491911889:2169..2764 | TCONS_00044634-exon-sc0005911-1491911889:2169..2764 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1510915933:2169..2764 | TCONS_00044634-exon-sc0005911-1510915933:2169..2764 | Clytia hemisphaerica | exon |
| TCONS_00044634-exon-sc0005911-1575043694:2169..2764 | TCONS_00044634-exon-sc0005911-1575043694:2169..2764 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005911 | supercontig | sc0005911:1594..2764 + |
Blast
The following BLAST results are available for this feature:
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