TCONS_00044640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044640
Unique NameTCONS_00044640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length413

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044640 ID=TCONS_00044640|Name=TCONS_00044640|organism=Clytia hemisphaerica|type=transcript|length=413bp
CTTGCTGGAAGACTGGGCCTGAGTGAGCTCTCCTCCCTGACATGTGTTTT
TATAAGAGCCTGTTCTCCCCAGCAAGGATGAGTGGAAGCCTGATCATAAC
AAGACATGAAGGATGAATCTCTTATACTGATATGTTAACACACGAGGATC
AACTTAATATAATATGGAAGTAGGATTTATTCAGACAGATGTCTTTTATG
TTCAATATATTCAGTTTTTAAAGATAACATCATTGGTCTCCACCATATTT
AAGATCAAAATAGCCACCCAACATtggtagcagagggttgttatGGTGAT
ATGGCAGGCTTCCTCTCATTTGCAACAGATAAACGTCACCACTGAAAATA
CCCTTATCACGACAAAGAACATCTACCGCGTCAAAAGAGACATCCATGAG
AACTCAGAAGCAT
Run BLAST on NCBI

transcript from alignment at sc0005922:2599..3011

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044640 ID=TCONS_00044640|Name=TCONS_00044640|organism=Clytia hemisphaerica|type=transcript|length=413bp|location=Sequence derived from alignment at sc0005922:2599..3011 (Clytia hemisphaerica)
ATGCTTCTGAGTTCTCATGGATGTCTCTTTTGACGCGGTAGATGTTCTTT
GTCGTGATAAGGGTATTTTCAGTGGTGACGTTTATCTGTTGCAAATGAGA
GGAAGCCTGCCATATCACCataacaaccctctgctaccaATGTTGGGTGG
CTATTTTGATCTTAAATATGGTGGAGACCAATGATGTTATCTTTAAAAAC
TGAATATATTGAACATAAAAGACATCTGTCTGAATAAATCCTACTTCCAT
ATTATATTAAGTTGATCCTCGTGTGTTAACATATCAGTATAAGAGATTCA
TCCTTCATGTCTTGTTATGATCAGGCTTCCACTCATCCTTGCTGGGGAGA
ACAGGCTCTTATAAAAACACATGTCAGGGAGGAGAGCTCACTCAGGCCCA
GTCTTCCAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028257XLOC_028257Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044640-exon-sc0005922-1491911889:2599..3011TCONS_00044640-exon-sc0005922-1491911889:2599..3011Clytia hemisphaericaexon
TCONS_00044640-exon-sc0005922-1510915933:2599..3011TCONS_00044640-exon-sc0005922-1510915933:2599..3011Clytia hemisphaericaexon
TCONS_00044640-exon-sc0005922-1575043694:2599..3011TCONS_00044640-exon-sc0005922-1575043694:2599..3011Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005922supercontigsc0005922:2599..3011 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.6523	2.39827	0.984552	1.20122	2.66526	1.29729	3.72066	1.67457	1.72413	0.862828	0.606978	1.28795	0.244134	1.16314	0	0.105976	0.261108	0	0	0.434213	0	0.492096	0.60449	1.11942	0.926822	0.666573	0.476932	0	0.579081	0.196664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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