TCONS_00044648 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044648
Unique NameTCONS_00044648
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length360

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044648 ID=TCONS_00044648|Name=TCONS_00044648|organism=Clytia hemisphaerica|type=transcript|length=360bp
gaaaaattaaaataagttCAACTTCTGTTTGTCTTTGTTGATGATATAAT
CAGAAGATCTAACCAAACTTTGACTGGAATTTCGTTgtattgaaaaatgt
caaagcgTACGTACCTTTCTACCTtcctccccctccccctcgtacgcttt
cgtacgcttttggtagtaccctccccctcccccctcagagcgtacgtact
ttttgaatggtcccataTGCTAATTTTGACGTAAATTGTAACTACACAAT
TACATGATTAATATCTTATGGCTTTAAGTGCACAATTGAGAGGACTTAAA
GGGTGaccttgaaaaaatgtttccgGTGCACTGGCCGGTTGCAAATTATC
TTCTTCATCA
Run BLAST on NCBI

transcript from alignment at sc0005935:945..1304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044648 ID=TCONS_00044648|Name=TCONS_00044648|organism=Clytia hemisphaerica|type=transcript|length=360bp|location=Sequence derived from alignment at sc0005935:945..1304 (Clytia hemisphaerica)
TGATGAAGAAGATAATTTGCAACCGGCCAGTGCACcggaaacattttttc
aaggtCACCCTTTAAGTCCTCTCAATTGTGCACTTAAAGCCATAAGATAT
TAATCATGTAATTGTGTAGTTACAATTTACGTCAAAATTAGCAtatggga
ccattcaaaaagtacgtacgctctgaggggggagggggagggtactacca
aaagcgtacgaaagcgtacgagggggagggggaggaAGGTAGAAAGGTAC
GTAcgctttgacatttttcaatacAACGAAATTCCAGTCAAAGTTTGGTT
AGATCTTCTGATTATATCATCAACAAAGACAAACAGAAGTTGaacttatt
ttaatttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028264XLOC_028264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044648-exon-sc0005935-1491911889:945..1304TCONS_00044648-exon-sc0005935-1491911889:945..1304Clytia hemisphaericaexon
TCONS_00044648-exon-sc0005935-1510915933:945..1304TCONS_00044648-exon-sc0005935-1510915933:945..1304Clytia hemisphaericaexon
TCONS_00044648-exon-sc0005935-1575043694:945..1304TCONS_00044648-exon-sc0005935-1575043694:945..1304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005935supercontigsc0005935:945..1304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.704856	0.687345	1.33012	4.10698	2.21792	2.50376	0	1.13117	1.38593	0.980967	0.714113	1.4605	2.81266	0.707124	0.667067	0.572692	1.5874	0.462036	0	3.65897	1.36299	2.32686	0.269391	2.20424	0.504515	0.675401	3.22166	3.78206	0.521557	0.531384
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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