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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044650 ID=TCONS_00044650|Name=TCONS_00044650|organism=Clytia hemisphaerica|type=transcript|length=1364bp
AGGTGTGGCCATCGTTGGAGCAGCTCTTTGGTGATTGGTTGTCGTTTGTC
GCTCACCGAAAAATCCTTTCGACTGTAGGTCTTTGGGAGGTTTATCCAAT
TTTCTGGTTGATCCACACCACATACTTGAAGACCTTCAACTACTTTAGCA
CTGGTGACTTCTTCTCCGTTTAGAGTTTTTATATTCAATGTGGTCTTTGG
GAAATTGGATCCAAGTTGTGACAACAAGTCGTTATCGATGAATGTTCCCT
GACTACAATTATCAAGCAGAGCATAGGTTAACACACGATTCTGatttaat
ttgataaaaactGGTACGATGCACATACTAACAAAGTCATTGTTTCTAAT
TACGTGAATTTCTAAAGATTCTGATGGCTTTTCAGGACTAGTAGCTTCCG
TTTTGAAAAGACCCTTTCTATAGCCATGAAATGATGTTGGATGCTTGCCA
CCACACTCTNGGGTGTTTCGGCCGGAGTCATCACGGGCTGGAATGGTGTA
TACGAATCGGAGGGTTGTAGCTGTGTTCGTGGTAGCTGATGATCTGTTGA
CAGATACGGTGAAGTTATTGTCGATCTCGGGAAAAATGTTGTCGTTGTCG
AGNGGGCTGGAATGGTGTATACGAATCGGAGGGTTGTAGCTGTGTTCGTG
GTAGCTGATGATCTGTTGACAGATACGGTGAAGTTATTGTCGATCTCGGG
AAAAATGTTGGCGTTGTCGAAGTAGGTGATATAGTTGTAATTGGTTGCAA
TTGCAGTGATATGTTCGACTGTAGCTGGTTCGGCACTGAAGATGGAGCAG
TAGGTGAAGGATTCAGTGAAGTTGTGACAAGTAGGGAATGGAGCTCGTTT
GGTTGGTTCATCCTTTGCGAAGAGTTTGATATGGGAATCGATGAAGTTGT
GTCTGGTGTAGGATTCGATGACGTCAGAAAGTTTGTTGAATGGAAAGGTG
GATTAGATGACGCCATGACTGGAGATGGGTGAAGGGATGGTTTTGTTGAC
GTCATGACTTGCGACGTATCGAGTGACGTGTTTGGTGACGTTGATGCTGA
TAAGTGATTTACTACACGAAATTCGCTTTCTTCTGATTTTAAGAACTGCC
CGTATACGTTGAGCCTTGCTTGTTGGGATGCGATTTTTCGTTGAGATTCT
AACTCTGTCAGTTTCGATTTGAACGATATTTCGGCTTGTAGAGCTGCCAT
TTTCGCTGCTTCTTGCATGTATGCATCTTTGACGGATTTACGACTGCCGC
CACTACCACTGGATCTTCGACTAGAGCTACTCGAACGGTTTGAACGGCTA
GAACGATGGCTCCCTTCTTGACTTGTCCTTTTCTTTGGCTGAACGCTTTC
CTCGTATCGTCTGA Run BLAST on NCBI protein sequence of TCONS_00044650-protein >TCONS_00044650-protein ID=TCONS_00044650-protein|Name=TCONS_00044650-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
RRYEESVQPKKRTSQEGSHRSSRSNRSSSSSRRSSGSGGSRKSVKDAYMQ
EAAKMAALQAEISFKSKLTELESQRKIASQQARLNVYGQFLKSEESEFRV
VNHLSASTSPNTSLDTSQVMTSTKPSLHPSPVMASSNPPFHSTNFLTSSN
PTPDTTSSIPISNSSQRMNQPNELHSLLVTTSLNPSPTAPSSVPNQLQSN
ISLQLQPITTISPTSTTPTFFPRSTITSPYLSTDHQLPRTQLQPSDSYTP
FQPXRQRQHFSRDRQ Run BLAST on NCBI transcript from alignment at sc0005937:1428..2791 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044650 ID=TCONS_00044650|Name=TCONS_00044650|organism=Clytia hemisphaerica|type=transcript|length=1364bp|location=Sequence derived from alignment at sc0005937:1428..2791 (Clytia hemisphaerica)
TCAGACGATACGAGGAAAGCGTTCAGCCAAAGAAAAGGACAAGTCAAGAA
GGGAGCCATCGTTCTAGCCGTTCAAACCGTTCGAGTAGCTCTAGTCGAAG
ATCCAGTGGTAGTGGCGGCAGTCGTAAATCCGTCAAAGATGCATACATGC
AAGAAGCAGCGAAAATGGCAGCTCTACAAGCCGAAATATCGTTCAAATCG
AAACTGACAGAGTTAGAATCTCAACGAAAAATCGCATCCCAACAAGCAAG
GCTCAACGTATACGGGCAGTTCTTAAAATCAGAAGAAAGCGAATTTCGTG
TAGTAAATCACTTATCAGCATCAACGTCACCAAACACGTCACTCGATACG
TCGCAAGTCATGACGTCAACAAAACCATCCCTTCACCCATCTCCAGTCAT
GGCGTCATCTAATCCACCTTTCCATTCAACAAACTTTCTGACGTCATCGA
ATCCTACACCAGACACAACTTCATCGATTCCCATATCAAACTCTTCGCAA
AGGATGAACCAACCAAACGAGCTCCATTCCCTACTTGTCACAACTTCACT
GAATCCTTCACCTACTGCTCCATCTTCAGTGCCGAACCAGCTACAGTCGA
ACATATCACTGCAATTGCAACCAATTACAACTATATCACCTACTTCGACA
ACGCCAACATTTTTCCCGAGATCGACAATAACTTCACCGTATCTGTCAAC
AGATCATCAGCTACCACGAACACAGCTACAACCCTCCGATTCGTATACAC
CATTCCAGCCCNCTCGACAACGACAACATTTTTCCCGAGATCGACAATAA
CTTCACCGTATCTGTCAACAGATCATCAGCTACCACGAACACAGCTACAA
CCCTCCGATTCGTATACACCATTCCAGCCCGTGATGACTCCGGCCGAAAC
ACCCNAGAGTGTGGTGGCAAGCATCCAACATCATTTCATGGCTATAGAAA
GGGTCTTTTCAAAACGGAAGCTACTAGTCCTGAAAAGCCATCAGAATCTT
TAGAAATTCACGTAATTAGAAACAATGACTTTGTTAGTATGTGCATCGTA
CCagtttttatcaaattaaatCAGAATCGTGTGTTAACCTATGCTCTGCT
TGATAATTGTAGTCAGGGAACATTCATCGATAACGACTTGTTGTCACAAC
TTGGATCCAATTTCCCAAAGACCACATTGAATATAAAAACTCTAAACGGA
GAAGAAGTCACCAGTGCTAAAGTAGTTGAAGGTCTTCAAGTATGTGGTGT
GGATCAACCAGAAAATTGGATAAACCTCCCAAAGACCTACAGTCGAAAGG
ATTTTTCGGTGAGCGACAAACGACAACCAATCACCAAAGAGCTGCTCCAA
CGATGGCCACACCT Coding sequence (CDS) from alignment at sc0005937:1428..2791 >TCONS_00044650 ID=TCONS_00044650|Name=TCONS_00044650|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0005937:1428..2791 (Clytia hemisphaerica)
AGACGATACGAGGAAAGCGTTCAGCCAAAGAAAAGGACAAGTCAAGAAGG
GAGCCATCGTTCTAGCCGTTCAAACCGTTCGAGTAGCTCTAGTCGAAGAT
CCAGTGGTAGTGGCGGCAGTCGTAAATCCGTCAAAGATGCATACATGCAA
GAAGCAGCGAAAATGGCAGCTCTACAAGCCGAAATATCGTTCAAATCGAA
ACTGACAGAGTTAGAATCTCAACGAAAAATCGCATCCCAACAAGCAAGGC
TCAACGTATACGGGCAGTTCTTAAAATCAGAAGAAAGCGAATTTCGTGTA
GTAAATCACTTATCAGCATCAACGTCACCAAACACGTCACTCGATACGTC
GCAAGTCATGACGTCAACAAAACCATCCCTTCACCCATCTCCAGTCATGG
CGTCATCTAATCCACCTTTCCATTCAACAAACTTTCTGACGTCATCGAAT
CCTACACCAGACACAACTTCATCGATTCCCATATCAAACTCTTCGCAAAG
GATGAACCAACCAAACGAGCTCCATTCCCTACTTGTCACAACTTCACTGA
ATCCTTCACCTACTGCTCCATCTTCAGTGCCGAACCAGCTACAGTCGAAC
ATATCACTGCAATTGCAACCAATTACAACTATATCACCTACTTCGACAAC
GCCAACATTTTTCCCGAGATCGACAATAACTTCACCGTATCTGTCAACAG
ATCATCAGCTACCACGAACACAGCTACAACCCTCCGATTCGTATACACCA
TTCCAGCCCNCTCGACAACGACAACATTTTTCCCGAGATCGACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044650-exon-sc0005937-1491911889:1428..2791 | TCONS_00044650-exon-sc0005937-1491911889:1428..2791 | Clytia hemisphaerica | exon |
| TCONS_00044650-exon-sc0005937-1510915933:1428..2791 | TCONS_00044650-exon-sc0005937-1510915933:1428..2791 | Clytia hemisphaerica | exon |
| TCONS_00044650-exon-sc0005937-1575043694:1428..2791 | TCONS_00044650-exon-sc0005937-1575043694:1428..2791 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005937 | supercontig | sc0005937:1428..2791 . |
Blast
The following BLAST results are available for this feature:
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