TCONS_00044659 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044659
Unique NameTCONS_00044659
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length500

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044659 ID=TCONS_00044659|Name=TCONS_00044659|organism=Clytia hemisphaerica|type=transcript|length=500bp
AATTTTCGGTTCAGTACCattatatatttcataaaatcaCTTTCTATATA
TGTACATGTAGAGAGGAATTGTGGAACACATTTGACTAATATTTATCCGT
TGCAATTAAAAGCTTTTTAGGGAAGAAAAAAGTTGCCAAAACAAGTCTTC
GCTCTTAGATTGGTGATAAGTAAATTACACAATAATCAACGAAGGATTaa
gtaaataaattaaaaaggtATTAATTAGGTATGTACAGAATTGAGGTCTT
TTAATTGTATACACGggaacaaaaatattattatttgaattaaaaaaata
gtATCATTGATAATAAATTAGACGCCGACTTTAGCAGTTTGATTGAGGTT
GAAACCACCTCCTGTGAATTTAGGTCCATTTGTACGCTGTGGTTGGTAAG
GTGGCATTGCTGCTTGGGCGATGTTACGCTCACGATCCCTAAAAAGAGTC
GGTATACACACAAGTGAGATTTACAACAGACAGAAAAAAAGCAAACTAAA
Run BLAST on NCBI

transcript from alignment at sc0005954:2..501

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044659 ID=TCONS_00044659|Name=TCONS_00044659|organism=Clytia hemisphaerica|type=transcript|length=500bp|location=Sequence derived from alignment at sc0005954:2..501 (Clytia hemisphaerica)
TTTAGTTTGCTTTTTTTCTGTCTGTTGTAAATCTCACTTGTGTGTATACC
GACTCTTTTTAGGGATCGTGAGCGTAACATCGCCCAAGCAGCAATGCCAC
CTTACCAACCACAGCGTACAAATGGACCTAAATTCACAGGAGGTGGTTTC
AACCTCAATCAAACTGCTAAAGTCGGCGTCTAATTTATTATCAATGATac
tatttttttaattcaaataataatatttttgttccCGTGTATACAATTAA
AAGACCTCAATTCTGTACATACCTAATTAATacctttttaatttatttac
ttAATCCTTCGTTGATTATTGTGTAATTTACTTATCACCAATCTAAGAGC
GAAGACTTGTTTTGGCAACTTTTTTCTTCCCTAAAAAGCTTTTAATTGCA
ACGGATAAATATTAGTCAAATGTGTTCCACAATTCCTCTCTACATGTACA
TATATAGAAAGtgattttatgaaatatataatGGTACTGAACCGAAAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028275XLOC_028275Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044659-exon-sc0005954-1491911889:2..501TCONS_00044659-exon-sc0005954-1491911889:2..501Clytia hemisphaericaexon
TCONS_00044659-exon-sc0005954-1510915933:2..501TCONS_00044659-exon-sc0005954-1510915933:2..501Clytia hemisphaericaexon
TCONS_00044659-exon-sc0005954-1575043694:2..501TCONS_00044659-exon-sc0005954-1575043694:2..501Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005954supercontigsc0005954:2..501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.408	21.0432	23.3288	24.7143	194.499	139.924	71.3181	63.5388	26.917	33.2138	24.333	22.0041	4.54064	6.06279	3.80756	4.75472	9.15224	7.5046	8.03521	5.15345	6.8368	7.41695	11.183	6.60852	165.584	110.163	14.8783	21.0524	7.71312	9.65073
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044659 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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