|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044682 ID=TCONS_00044682|Name=TCONS_00044682|organism=Clytia hemisphaerica|type=transcript|length=1610bp
TAcagtgattctttgatcttgcACCGCAAGCTGGCTCAATCAGCGTTCCA
AATGTTTGGGGACGAAATGGAGTCTCTAGAGGTCCGGGTTTTAGACAATC
TACAAACTTTCTTTAAAACATGTAATCAACATATTGAAGAtccgaaattt
caaatttttcatgatGTTGAACATACATTTTTTAATGTAATGTCTACCAT
TGTTCTTGGTGAGAAAATACGTAAAGATTGCGATCGCTTCTTAAAAATCC
GCCAAGCTGTTTTCTACATGATGCAGTCCGGTGTCACACTCTCTATGGTG
AATTTCTACCCCGTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGAT
GATCAAAGTGATTCAAGAGAGGGATGACGTCTTACAAaatctggtcagta
aaatagaACGAGATTACGACATGGTGAATAAACCATCAAACTATATTGAA
GCTTTGTTAAGATCCAAAATGGAGAATAGTGATGCTGAAAATAATAATGT
TGAAAATGGTGACAAAAAACAATTTGTAGATTTCACACGTGATCATTTGG
AGATGAACGTCTTTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTT
TCCGCTACTTGGTCTATCCTGTTCCTCATGAAATGGCCGGAAGTACAAGA
AAAATGCCACCAGCACTTAGACCGCATTAAAGGACCCAAAACAGATGATG
GTATACAAATGCCAGTTAGACTAGAAGATAAACAACATCTTCCTTATTTC
ATGGCAGTGATTTATGAGACTTTGAGATTGGCATCTACTCTAccttttgg
tgtttttcataAAGCGAGAGAGAATACAACATTAAATGGTTTCAATATCG
AaaaagGTACTCCCTTCATGATCAATCTGTGGACCATCCATCACgatcct
aaaaacttcaaagATCCTTTACAATTCAATCCAGACAGATTCCTTGATCA
AGATGGCTCCCTCCTCCCGTCAagtaaaatcaagaattttCTCGCATTCA
GTGCTGGACCTCGACAATGTATtggtcaaactattgctaaaTCTGAGCTG
TTCTTGTTCTTAACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACC
GTTGAATAAGGAGCTAAGCACGAATGGAAACACTAAAGTAACGCATGCAC
CGAAACCGTTCAATGTATGTTTGAAACATCGCTGTTGATTGGTTGGTTCG
ATTGGACAATCCATATTTTGTTGATTAGGTGTACAGTTAGTGAATAATAA
GAAGTTCAATCTCGTCTCTCAAAAAATTACATATTAAGATTATAACTTTT
CCAAATAAATAATAACAGACTTACCATTGAACTCTAAATAAATCACTAGA
ATGGTTATCTCCATAGCAACTCCCTTGGAAAGGTCTAACCTGCTCGTATC
TTATTGACATCTTTTACTTGAAAAAGATTAAATAGTAGCCAAATATTGTA
GCCCAGAGTTGTAAAATTGATCGATTTTAGTTGTCTTCCCTAAAAATATG
CTCTTTCCAGTCTTAAATTTTAGAGTTCAATAAAACTTACATATTAATCA
CGATGAATGTTTCCACGAACTGACAATGGTAGAGAGATATGCACATCCCA
AAGAAAGTCG Run BLAST on NCBI protein sequence of TCONS_00044682-protein >TCONS_00044682-protein ID=TCONS_00044682-protein|Name=TCONS_00044682-protein|organism=Clytia hemisphaerica|type=polypeptide|length=395bp
YSDSLILHRKLAQSAFQMFGDEMESLEVRVLDNLQTFFKTCNQHIEDPKF
QIFHDVEHTFFNVMSTIVLGEKIRKDCDRFLKIRQAVFYMMQSGVTLSMV
NFYPVLRYLPNPELTKMIKVIQERDDVLQNLVSKIERDYDMVNKPSNYIE
ALLRSKMENSDAENNNVENGDKKQFVDFTRDHLEMNVFDMFLAGVETVAV
SATWSILFLMKWPEVQEKCHQHLDRIKGPKTDDGIQMPVRLEDKQHLPYF
MAVIYETLRLASTLPFGVFHKARENTTLNGFNIEKGTPFMINLWTIHHDP
KNFKDPLQFNPDRFLDQDGSLLPSSKIKNFLAFSAGPRQCIGQTIAKSEL
FLFLTNFLYNFKLENSPLNKELSTNGNTKVTHAPKPFNVCLKHRC Run BLAST on NCBI transcript from alignment at sc0006004:2..2826+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044682 ID=TCONS_00044682|Name=TCONS_00044682|organism=Clytia hemisphaerica|type=transcript|length=2825bp|location=Sequence derived from alignment at sc0006004:2..2826+ (Clytia hemisphaerica)
TAcagtgattctttgatcttgcACCGCAAGCTGGCTCAATCAGCGTTCCA
AATGTTTGGGGACGAAATGGAGTCTCTAGAGGTCCGGGTTTTAGACAATC
TACAAACTTTCTTTAAAACATGTAATCAACATATTGAAGAtccgaaattt
caaatttttcatgatGTTGAACATACATTTTTTAATGTAATGTCTACCAT
TGTTCTTGGTGAGAAAATACGTAAAGATTGCGATCGCTTCTTAAAAATCC
GCCAAGCTGTTTTCTACATGATGCAGTCCGGTGTCACACTCTCTATGGTG
AATTTCTACCCCGTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGAT
GATCAAAGTGATTCAAGAGAGGGATGACGTCTTACAAaatctggtcagta
aaatagaACGAGATTACGACATGGTGAATAAACCATCAAACTATATTGAA
GCTTTGTTAAGATCCAAAATGGAGAATAGTGATGCTGAAAATAATAATGT
TGAAAATGGTGACAAAAAACAATTTGTAGATTTCACACGTGATCATTTGG
AGATGAACGTCTTTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTT
TCCGCTACTTGGTCTATCCTGTTCCTCATGAAATGGCCGGAAGTACAAGA
AAAATGCCACCAGCACTTAGACCGCATTAAAGGACCCAAAACAGATGATG
GTATACAAATGCCAGTTAGACTAGAAGATAAACAACATCTTCCTTATTTC
ATGGCAGTGATTTATGAGACTTTGAGATTGGCATCTACTCTAccttttgg
tgtttttcataAAGCGAGAGAGAATACAACATTAAATGGTTTCAATATCG
AaaaaggtatgtttttatttggaAAAGATTCTTATTCTAAGAACCTTCCT
GTTCGATATTCGGTAAGAGGAAAAAATCCATAGTTTTAGTAAACAACTTA
AGGAATTCATTTCGTTCTCATAACTTTCTCAGACTCGTTCTGCAAAAGAC
AtcaacaataaaaacatcatcATCACTTCCTTCAGGGAAATAATTTTAGC
GGTcggaaaaaatttggaaaaatcacATTTCgaaggaattaattttcgca
gttttACCCTATTTTGGGCACATTCTTTTATCACCCAAgggattttcaca
ttttttgaatttgtaaTTCGTGGGTTCTAATTCTCGCGGTTTCTccgaaa
gaagaaaatttcttATTCCCTTAAAGcatagaggtaataaaaaatagatg
gagtaacaacttttctgtaatagccagagaagtcataaaactctttagaa
atttcattcaaatcggcctcctttgattaccaatccttgatagcaaaaat
cagtcaagatatagattataagaactaaagtaaagttattctgtccaacg
aaacctcgtatttttaggtaaaatgcgattttttttcgattaataatttc
tttataattttgaaagaagtttttattttatcgggaaactttcgagaggt
aaacttttttaaattttgcaaattctttgttgtttgtggaaggttctttg
ctataaatatctttagatctaaaatagcagttgcctcaaaattttgatag
tatatagttgaaagattagcattagtaaatatgtaaaaattgacaaaaat
cgccgaggattccctgagcagcgaacattttaaattcgatgttctgtgct
tattcttgcaaggttttcttatgttttataaacaaaactgtcatcacaca
ataaacaaattaaaaatgtagcgtgattttattcaaattctcttcgactc
aagtattcccatgagcgaaagccaaattaatggctttttccgaaagcaac
aaagcaacagtttgctatcaacgatacaatacaatagaatagtaggagtg
gtatctccatctatatttttattacctccatgcttAAAGTAGTTAACAAT
TAATCTGAATTATTTGGGTGAATTCTTTTTGTGGTTACGATTGAAGAAGT
GTTTTTGGAAAGGttaaaaatgtatttcaaaACTCGTACATCAAaattct
tctctttttttcatccaaaagGTACTCCCTTCATGATCAATCTGTGGACC
ATCCATCACgatcctaaaaacttcaaagATCCTTTACAATTCAATCCAGA
CAGATTCCTTGATCAAGATGGCTCCCTCCTCCCGTCAagtaaaatcaaga
attttCTCGCATTCAGTGCTGGACCTCGACAATGTATtggtcaaactatt
gctaaaTCTGAGCTGTTCTTGTTCTTAACGAATTTCTTATATAATTTCAA
GTTGGAGAATTCACCGTTGAATAAGGAGCTAAGCACGAATGGAAACACTA
AAGTAACGCATGCACCGAAACCGTTCAATGTATGTTTGAAACATCGCTGT
TGATTGGTTGGTTCGATTGGACAATCCATATTTTGTTGATTAGGTGTACA
GTTAGTGAATAATAAGAAGTTCAATCTCGTCTCTCAAAAAATTACATATT
AAGATTATAACTTTTCCAAATAAATAATAACAGACTTACCATTGAACTCT
AAATAAATCACTAGAATGGTTATCTCCATAGCAACTCCCTTGGAAAGGTC
TAACCTGCTCGTATCTTATTGACATCTTTTACTTGAAAAAGATTAAATAG
TAGCCAAATATTGTAGCCCAGAGTTGTAAAATTGATCGATTTTAGTTGTC
TTCCCTAAAAATATGCTCTTTCCAGTCTTAAATTTTAGAGTTCAATAAAA
CTTACATATTAATCACGATGAATGTTTCCACGAACTGACAATGGTAGAGA
GATATGCACATCCCAAAGAAAGTCG Coding sequence (CDS) from alignment at sc0006004:2..2826+ >TCONS_00044682 ID=TCONS_00044682|Name=TCONS_00044682|organism=Clytia hemisphaerica|type=CDS|length=2376bp|location=Sequence derived from alignment at sc0006004:2..2826+ (Clytia hemisphaerica)
TAcagtgattctttgatcttgcACCGCAAGCTGGCTCAATCAGCGTTCCA
AATGTTTGGGGACGAAATGGAGTCTCTAGAGGTCCGGGTTTTAGACAATC
TACAAACTTTCTTTAAAACATGTAATCAACATATTGAAGAtccgaaattt
caaatttttcatgatGTTGAACATACATTTTTTAATGTAATGTCTACCAT
TGTTCTTGGTGAGAAAATACGTAAAGATTGCGATCGCTTCTTAAAAATCC
GCCAAGCTGTTTTCTACATGATGCAGTCCGGTGTCACACTCTCTATGGTG
AATTTCTACCCCGTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGAT
GATCAAAGTGATTCAAGAGAGGGATGACGTCTTACAAaatctggtcagta
aaatagaACGAGATTACGACATGGTGAATAAACCATCAAACTATATTGAA
GCTTTGTTAAGATCCAAAATGGAGAATAGTGATGCTGAAAATAATAATGT
TGAAAATGGTGACAAAAAACAATTTGTAGATTTCACACGTGATCATTTGG
AGATGAACGTCTTTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTT
TCCGCTACTTGGTCTATCCTGTTCCTCATGAAATGGCCGGAAGTACAAGA
AAAATGCCACCAGCACTTAGACCGCATTAAAGGACCCAAAACAGATGATG
GTATACAAATGCCAGTTAGACTAGAAGATAAACAACATCTTCCTTATTTC
ATGGCAGTGATTTATGAGACTTTGAGATTGGCATCTACTCTAccttttgg
tgtttttcataAAGCGAGAGAGAATACAACATTAAATGGTTTCAATATCG
AaaaagGTACTCCCTTCATGATCAATCTGTGGACCATCCATCACgatcct
aaaaacttcaaagATCCTTTACAATTCAATCCAGACAGATTCCTTGATCA
AGATGGCTCCCTCCTCCCGTCAagtaaaatcaagaattttCTCGCATTCA
GTGCTGGACCTCGACAATGTATtggtcaaactattgctaaaTCTGAGCTG
TTCTTGTTCTTAACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACC
GTTGAATAAGGAGCTAAGCACGAATGGAAACACTAAAGTAACGCATGCAC
CGAAACCGTTCAATGTATGTTTGAAACATCGCTGTTGATAcagtgattct
ttgatcttgcACCGCAAGCTGGCTCAATCAGCGTTCCAAATGTTTGGGGA
CGAAATGGAGTCTCTAGAGGTCCGGGTTTTAGACAATCTACAAACTTTCT
TTAAAACATGTAATCAACATATTGAAGAtccgaaatttcaaatttttcat
gatGTTGAACATACATTTTTTAATGTAATGTCTACCATTGTTCTTGGTGA
GAAAATACGTAAAGATTGCGATCGCTTCTTAAAAATCCGCCAAGCTGTTT
TCTACATGATGCAGTCCGGTGTCACACTCTCTATGGTGAATTTCTACCCC
GTTTTGCGTTATCTTCCGAATCCTGAACTGACCAAGATGATCAAAGTGAT
TCAAGAGAGGGATGACGTCTTACAAaatctggtcagtaaaatagaACGAG
ATTACGACATGGTGAATAAACCATCAAACTATATTGAAGCTTTGTTAAGA
TCCAAAATGGAGAATAGTGATGCTGAAAATAATAATGTTGAAAATGGTGA
CAAAAAACAATTTGTAGATTTCACACGTGATCATTTGGAGATGAACGTCT
TTGATATGTTTTTGGCTGGAGTCGAAACGGTGGCAGTTTCCGCTACTTGG
TCTATCCTGTTCCTCATGAAATGGCCGGAAGTACAAGAAAAATGCCACCA
GCACTTAGACCGCATTAAAGGACCCAAAACAGATGATGGTATACAAATGC
CAGTTAGACTAGAAGATAAACAACATCTTCCTTATTTCATGGCAGTGATT
TATGAGACTTTGAGATTGGCATCTACTCTAccttttggtgtttttcataA
AGCGAGAGAGAATACAACATTAAATGGTTTCAATATCGAaaaagGTACTC
CCTTCATGATCAATCTGTGGACCATCCATCACgatcctaaaaacttcaaa
gATCCTTTACAATTCAATCCAGACAGATTCCTTGATCAAGATGGCTCCCT
CCTCCCGTCAagtaaaatcaagaattttCTCGCATTCAGTGCTGGACCTC
GACAATGTATtggtcaaactattgctaaaTCTGAGCTGTTCTTGTTCTTA
ACGAATTTCTTATATAATTTCAAGTTGGAGAATTCACCGTTGAATAAGGA
GCTAAGCACGAATGGAAACACTAAAGTAACGCATGCACCGAAACCGTTCA
ATGTATGTTTGAAACATCGCTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044682-exon-sc0006004-1491911889:2..857 | TCONS_00044682-exon-sc0006004-1491911889:2..857 | Clytia hemisphaerica | exon |
| TCONS_00044682-exon-sc0006004-1510915933:2..857 | TCONS_00044682-exon-sc0006004-1510915933:2..857 | Clytia hemisphaerica | exon |
| TCONS_00044682-exon-sc0006004-1575043694:2..857 | TCONS_00044682-exon-sc0006004-1575043694:2..857 | Clytia hemisphaerica | exon |
| TCONS_00044682-exon-sc0006004-1491911889:2073..2826 | TCONS_00044682-exon-sc0006004-1491911889:2073..2826 | Clytia hemisphaerica | exon |
| TCONS_00044682-exon-sc0006004-1510915933:2073..2826 | TCONS_00044682-exon-sc0006004-1510915933:2073..2826 | Clytia hemisphaerica | exon |
| TCONS_00044682-exon-sc0006004-1575043694:2073..2826 | TCONS_00044682-exon-sc0006004-1575043694:2073..2826 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006004 | supercontig | sc0006004:2..2826 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00044682 vs. Swiss-Prot (Human)
Match: CP1A2 (Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3) HSP 1 Score: 162.155 bits (409), Expect = 3.449e-43 Identity = 105/349 (30.09%), Postives = 172/349 (49.28%), Query Frame = 1
Query: 25 RKLAQSA---FQMFGDEMES----LEVRVLDNLQTFFKTCNQHIEDPK-FQIFHDVEHTFFNVMSTIVLGEKIRKDCDRFLKIRQAVFYMMQSGVTLSMVNFYPVLRYLPNPELTKMIKVIQERDDVLQNLVSKIERDYDMVNKPSNYIEALLRSKMENSDAENNNVENGDKKQFVDFTRDHLEMNVFDMFLAGVETVAVSATWSILFLMKWPEVQEKCHQHLDRIKGPKTDDGIQMPVRLEDKQHLPYFMAVIYETLRLASTLPFGVFHKARENTTLNGFNIEKGTPFMINLWTIHHDPKNFKDPLQFNPDRFLDQDGSLLPSSKIKNFLAFSAGPRQCIGQTIAKSE 1047
R+LAQ+A F + D S LE V + + + P F ++ V + NV+ + G+ + D L + + +++ + + ++F+P+LRYLPNP L + Q LQ V + +D+D N + AL + + A N + +++ V+ V D+F AG +TV + +WS+++L+ PE+Q K + LD + G + RL D+ LPY A I ET R +S LPF + H +TTLNGF I K +N W ++HDP+ ++DP +F P+RFL DG+ + + + F G R+CIG+ +AK E
Sbjct: 137 RRLAQNALNTFSIASDPASSSSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANVIGAMCFGQHFPESSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPALQRFKAFNQRFLWFLQKTVQEHYQDFDK-NSVRDITGALFKHSKKGPRASGNLIP---QEKIVNL--------VNDIFGAGFDTVTTAISWSLMYLVTKPEIQRKIQKELDTVIGRERRP------RLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVLAKWE 467
The following BLAST results are available for this feature:
|
