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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044696 ID=TCONS_00044696|Name=TCONS_00044696|organism=Clytia hemisphaerica|type=transcript|length=641bp
CTTGTCCTGACGGTTCAATTGAGCACAATGGGAAATGTATCACTCCAGAA
CAATGCCCATGTTTTCATGATGGAAAAGCGTACGAAGAAAATAGTAAAAT
GTCGCGTGGATGCAATGAATGTATTTGCAAAAGTGGTAAATGGAAATGCA
CCGAAGATAATTGCCCAGGAGTGTGTTCTGTATTCGGTGATCCTCATTAC
AAGACATTCGATGGCAAGATCTTCGATTACCAGGGCCGCTGTAAACACAC
TATGGTATCTGACACATGTGCTGGACAGCCTTCAAAATACAAGAAAGAGC
AAATCCACGTTGAAGTCAATACTCAAGCATGCGGCTCACAAGAGGTGACA
TGCGCAAAAGAGATAACAGCCACTATCCACGGATCAACTTTCATCCTCAA
GAAAGGTTATAAAAAGGCAGTCATTAAACCAGCGTTGGAGGATAAACCAA
GTTTCAAAGTCTACGATTATGCTGGTTCCTACGTTCATATTGTTACTGAC
CATGGTATCTCCCTTATGTGGGATAACGGCACTAGACTGTATATCACTGT
CCAGCCTGCATTAGCTGGTAAACTTTGTGGTCTTTGTGGCAATTATGATG
GAAGTGAGGCTAATGATTTCGTCACCATTCAAGGAGACACG Run BLAST on NCBI protein sequence of TCONS_00044696-protein >TCONS_00044696-protein ID=TCONS_00044696-protein|Name=TCONS_00044696-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
CPDGSIEHNGKCITPEQCPCFHDGKAYEENSKMSRGCNECICKSGKWKCT
EDNCPGVCSVFGDPHYKTFDGKIFDYQGRCKHTMVSDTCAGQPSKYKKEQ
IHVEVNTQACGSQEVTCAKEITATIHGSTFILKKGYKKAVIKPALEDKPS
FKVYDYAGSYVHIVTDHGISLMWDNGTRLYITVQPALAGKLCGLCGNYDG
SEANDFVTIQGDT Run BLAST on NCBI transcript from alignment at sc0006026:2..2597- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044696 ID=TCONS_00044696|Name=TCONS_00044696|organism=Clytia hemisphaerica|type=transcript|length=2596bp|location=Sequence derived from alignment at sc0006026:2..2597- (Clytia hemisphaerica)
CTTGTCCTGACGGTTCAATTGAGCACAATGGGAAATGTATCACTCCAGAA
CAATGCCCATGTTTTCATGATGGAAAAGCGTACGAAGAAAATAGTAAAAT
GTCGCGTGGATGCAATGAATGGTACGTATTTACATTTTATTGATACTCTC
GATGTTAACCCTTCGAGCATCTTCCTATTTTTTTAATAGAGGAATCTTTG
GAGGGTGGCCCCCCTTAAAATCTCAAGATTTACAAGTTCCATGATCTTGA
AATTTTGACCAGTGGTAGATATGGATATTGCAAAATTTTGGTTCAGCCAC
CTGTCCGGTTGGTATTTTACAATGTAAACTTGACCAAAATCATGTATTGA
CTTGTTGACCCGTTCGATTTGACTGAAATCTGTTCCTGAAGGCTGATTTG
TCAAATAAAAGAGACAATAGTAACAGAAAAAAAAATCGTTCCCATGAGTA
TTTGGTACTTTGTTGTTTTTTTATTTCAAAATTTTCACCAAAGATGCTAA
TTCATATTTGGTGCACACTTGCAAAATTTCAAGTAAATTGGATAAATATT
TCAAAAAAATTCGTTTTGGCGTGGCCTCCTTGCCCCTCCCAAGAAGAGAT
TCTACTGTTCACATTCCTCATGAATGAAAGGAAAATTTCTCAAGGAACAT
TATGTTATCATTTAGGTCAATTTGGGTAGGAAAAATGTCTTATTAAACTG
GTATGGTTATATCAAATTTTGAAAGGGGGAGGGGTCTAGGGTTGGGAATG
GGTCTAGGGTTGGGAGGAGTTGGATCTAGGTGAGATGAGGAATGTCCCTT
CAAAATTATGGGCTAAATTTCACAGGCTGTTTTTTACAGTGATTAGTAGT
TTATTCGTTGCGTTTGACCAATGAGCTGATTATTAGTTATGAGTTAGCTT
TAGCGACCGTAGTGCAGTGGTAGAGCATCAGGTTGTGGCGCGCAAGGGTG
TGGGTTATACCAAAGATTTACAAAATGGTACTTGATACCTCTCTGCTTGA
TGCTCAGCAATTAAGAGAAGGACCAAGGGTAAGTGAAGCAATCCAGGGAG
AAAGAGTGGCGCCGTCCCCTATCTTCGGGTTAACAGCTATCGAAAGGCAC
GCCACCGACTGCGGTCGCAAACTTACTTACTTATGAGTTAGTTACTAATG
AGTTCTCTTTTATTTCATATAGTATTTGCAAAAGTGGTAAATGGAAATGC
ACCGAAGATAATTGCCCAGGTAATCTATATTTTTCATCATAAACATAAAC
AAACGCAGAGCAATATGTATTTCAATAAGTCTTGTATTACACGTTTTTTT
ATAAGAACAAACTATATGAGAACATAAGGCTTCGATGGCCAAAATCTTTA
AGAAGAAGCTCAGAAAATTTTAAGGCTTCGCGGACTCTTATCAGGAAAAG
TTATCTTTCAATCCATCAAACAAGAGTACACAACTCAGAGTTTCATGTTT
CCACATTTTATCAAATGTACAACAAGAAATGACTGTAAAATTGAAAATTG
ACGTTAAAAAACTAGAAAAAATGTAGAAAAAAGTGAGTGATTGGCGTAAT
AAAATTTATAATTCGCGGACTCTAAAACACCCAAAATGGACAAAATCCTC
AAAAAGTTGCGAAAACAAGAACATGTTAAGAGCAGTTTTAGGCTTAAAAC
TCAAAAAGTTAAGAATACCAAAGGATTCACAATAATTTAAATGTTCTTGT
AAAAAAACGTGTATTAATATGGTTGTACTGAAAGAATTTTGTTCTAAGAT
ATTAGTTAATTATTAATTGCATTAAAAGCGCATTACATTAAAAGTGCGCA
CTCTTCTTTGCTAATAATTTCAAATCACACTTAAGGGAATTACTTTTAAT
TGGTCTGACGTCATTTCAACATGGTAGCAACGAAATTTGAGCCCGAGAAA
AATTTTGAGGGTCAAAACCGCAAAAATTAATTTCTGCGAAATACAATTTT
TTCCAATTTTATTGAAAAATTTGGAAAATCCCTAGGAAAATGAAAGAAAT
TTGTCCAAAAAAGGGCAAAACCGCGCAAAATTAAAACCCGCGAAATGCAA
CTTTTCGGATATTTTTTTTCGACCGCGAAAATTAGTTCCAATAAGGTAAA
CTTTCACTGTTTTCAATTCTTAGGAGTGTGTTCTGTATTCGGTGATCCTC
ATTACAAGACATTCGATGGCAAGATCTTCGATTACCAGGGCCGCTGTAAA
CACACTATGGTATCTGACACATGTGCTGGACAGCCTTCAAAATACAAGAA
AGAGCAAATCCACGTTGAAGTCAATACTCAAGCATGCGGCTCACAAGAGG
TGACATGCGCAAAAGAGATAACAGCCACTATCCACGGATCAACTTTCATC
CTCAAGAAAGGTTATAAAAAGGCAGTCATTAAACCAGCGTTGGAGGATAA
ACCAAGTTTCAAAGTCTACGATTATGCTGGTTCCTACGTTCATATTGTTA
CTGACCATGGTATCTCCCTTATGTGGGATAACGGCACTAGACTGTATATC
ACTGTCCAGCCTGCATTAGCTGGTAAACTTTGTGGTCTTTGTGGCAATTA
TGATGGAAGTGAGGCTAATGATTTCGTCACCATTCAAGGAGACACG Coding sequence (CDS) from alignment at sc0006026:2..2597- >TCONS_00044696 ID=TCONS_00044696|Name=TCONS_00044696|organism=Clytia hemisphaerica|type=CDS|length=1917bp|location=Sequence derived from alignment at sc0006026:2..2597- (Clytia hemisphaerica)
GAGTGTGTTCTGTATTCGGTGATCCTCATTACAAGACATTCGATGGCAAG
ATCTTCGATTACCAGGGCCGCTGTAAACACACTATGGTATCTGACACATG
TGCTGGACAGCCTTCAAAATACAAGAAAGAGCAAATCCACGTTGAAGTCA
ATACTCAAGCATGCGGCTCACAAGAGGTGACATGCGCAAAAGAGATAACA
GCCACTATCCACGGATCAACTTTCATCCTCAAGAAAGGTTATAAAAAGGC
AGTCATTAAACCAGCGTTGGAGGATAAACCAAGTTTCAAAGTCTACGATT
ATGCTGGTTCCTACGTTCATATTGTTACTGACCATGGTATCTCCCTTATG
TGGGATAACGGCACTAGACTGTATATCACTGTCCAGCCTGCATTAGCTGG
TAAACTTTGTGGTCTTTGTGGCAATTATGATGGAAGTGAGGCTAATGATT
TCGTCACCATTCAAGGAGACACGTATTTGCAAAAGTGGTAAATGGAAATG
CACCGAAGATAATTGCCCAGTGTCCTGACGGTTCAATTGAGCACAATGGG
AAATGTATCACTCCAGAACAATGCCCATGTTTTCATGATGGAAAAGCGTA
CGAAGAAAATAGTAAAATGTCGCGTGGATGCAATGAATGGAGTGTGTTCT
GTATTCGGTGATCCTCATTACAAGACATTCGATGGCAAGATCTTCGATTA
CCAGGGCCGCTGTAAACACACTATGGTATCTGACACATGTGCTGGACAGC
CTTCAAAATACAAGAAAGAGCAAATCCACGTTGAAGTCAATACTCAAGCA
TGCGGCTCACAAGAGGTGACATGCGCAAAAGAGATAACAGCCACTATCCA
CGGATCAACTTTCATCCTCAAGAAAGGTTATAAAAAGGCAGTCATTAAAC
CAGCGTTGGAGGATAAACCAAGTTTCAAAGTCTACGATTATGCTGGTTCC
TACGTTCATATTGTTACTGACCATGGTATCTCCCTTATGTGGGATAACGG
CACTAGACTGTATATCACTGTCCAGCCTGCATTAGCTGGTAAACTTTGTG
GTCTTTGTGGCAATTATGATGGAAGTGAGGCTAATGATTTCGTCACCATT
CAAGGAGACACGTATTTGCAAAAGTGGTAAATGGAAATGCACCGAAGATA
ATTGCCCAGTGTCCTGACGGTTCAATTGAGCACAATGGGAAATGTATCAC
TCCAGAACAATGCCCATGTTTTCATGATGGAAAAGCGTACGAAGAAAATA
GTAAAATGTCGCGTGGATGCAATGAATGGAGTGTGTTCTGTATTCGGTGA
TCCTCATTACAAGACATTCGATGGCAAGATCTTCGATTACCAGGGCCGCT
GTAAACACACTATGGTATCTGACACATGTGCTGGACAGCCTTCAAAATAC
AAGAAAGAGCAAATCCACGTTGAAGTCAATACTCAAGCATGCGGCTCACA
AGAGGTGACATGCGCAAAAGAGATAACAGCCACTATCCACGGATCAACTT
TCATCCTCAAGAAAGGTTATAAAAAGGCAGTCATTAAACCAGCGTTGGAG
GATAAACCAAGTTTCAAAGTCTACGATTATGCTGGTTCCTACGTTCATAT
TGTTACTGACCATGGTATCTCCCTTATGTGGGATAACGGCACTAGACTGT
ATATCACTGTCCAGCCTGCATTAGCTGGTAAACTTTGTGGTCTTTGTGGC
AATTATGATGGAAGTGAGGCTAATGATTTCGTCACCATTCAAGGAGACAC
GTATTTGCAAAAGTGGTAAATGGAAATGCACCGAAGATAATTGCCCAGTG
TCCTGACGGTTCAATTGAGCACAATGGGAAATGTATCACTCCAGAACAAT
GCCCATGTTTTCATGATGGAAAAGCGTACGAAGAAAATAGTAAAATGTCG
CGTGGATGCAATGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044696-exon-sc0006026-1575043694:2477..2597 | TCONS_00044696-exon-sc0006026-1575043694:2477..2597 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1575043694:1379..1425 | TCONS_00044696-exon-sc0006026-1575043694:1379..1425 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1575043694:2..474 | TCONS_00044696-exon-sc0006026-1575043694:2..474 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1510915933:2477..2597 | TCONS_00044696-exon-sc0006026-1510915933:2477..2597 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1510915933:1379..1425 | TCONS_00044696-exon-sc0006026-1510915933:1379..1425 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1510915933:2..474 | TCONS_00044696-exon-sc0006026-1510915933:2..474 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1491911889:2477..2597 | TCONS_00044696-exon-sc0006026-1491911889:2477..2597 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1491911889:1379..1425 | TCONS_00044696-exon-sc0006026-1491911889:1379..1425 | Clytia hemisphaerica | exon |
| TCONS_00044696-exon-sc0006026-1491911889:2..474 | TCONS_00044696-exon-sc0006026-1491911889:2..474 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006026 | supercontig | sc0006026:2..2597 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001846 | VWF_type-D |
Blast
BLAST of TCONS_00044696 vs. Swiss-Prot (Human)
Match: MUC5A (Mucin-5AC OS=Homo sapiens GN=MUC5AC PE=1 SV=4) HSP 1 Score: 152.525 bits (384), Expect = 2.637e-41 Identity = 78/209 (37.32%), Postives = 113/209 (54.07%), Query Frame = 3
Query: 3 CPDGSI-EHNGKCITPEQCPCFHDGKAYEENSKMSRGCNECICKSGKWKCTEDNCPGVCSVFGDPHYKTFDGKIFDYQGRCKHTMVSDTCAGQPSKYKKEQIHVEVNTQACGSQEVTCAKEITATIHGSTFILKKGYKKAVIKPALEDKPSFKVYDYAGSYVHIVTDHGISLMWDNGTRLYITVQPALAGKLCGLCGNYDGSEANDFVT 626
CPDG + + G CIT E CPC H+ +Y + GCN C C S W+CT+D C C+V+GD HY TFDG+ + + G C++T+V + C G+ S ++ V CG+ TC+K I + G F LK + K + E + G Y+ + TD G+ L+WD T ++I + P G++CGLCGN+D NDF T
Sbjct: 845 CPDGLVADGEGGCITAEDCPCVHNEASYRAGQTIRVGCNTCTCDSRMWRCTDDPCLATCAVYGDGHYLTFDGQSYSFNGDCEYTLVQNHCGGKDS--TQDSFRVVTENVPCGTTGTTCSKAIKIFLGG--FELKLSHGKVEVIGTDESQEVPYTIRQMGIYLVVDTDIGLVLLWDKKTSIFINLSPEFKGRVCGLCGNFDDIAVNDFAT 1049 HSP 2 Score: 106.301 bits (264), Expect = 1.641e-25 Identity = 63/222 (28.38%), Postives = 105/222 (47.30%), Query Frame = 3
Query: 3 CPDGSIEHN---GKCITPEQCPCFHDGKAYEENSKMSRGCNECICKSGKWKCTEDNCPGVCSVFGDPHYKTFDGKIFDYQGRCKHTMVSDTCAGQPSKYKKEQIHVEVNTQACG-SQEVTCAKEITATIHGS-TFILKKGYKKAVIKPALEDKP--SFKVYDYAGSYVHIVTDHGISLMWD----NGTRLYITVQPALAGKLCGLCGNYDGSEANDFVTIQG 635
CP+G++ + C+ +C C ++G AY + S C C C G+W C E CPG CSV G H+ TFDGK + G C + + +P + E+ + CG + TC K +T ++ G+ T ++ K + + P + V + S I+ + L + +L++ + P L G+ CGLCGN++ +A+DF T+ G
Sbjct: 374 CPEGTVLDDIGQTGCVPVSKCACVYNGAAYAPGATYSTDCTNCTCSGGRWSCQEVPCPGTCSVLGGAHFSTFDGKQYTVHGDCSYVLT------KPCDSSAFTVLAEL--RRCGLTDSETCLKSVTLSLDGAQTVVVIKASGEVFLNQIYTQLPISAANVTIFRPSTFFIIAQTSLGLQLNLQLVPTMQLFMQLAPKLRGQTCGLCGNFNSIQADDFRTLSG 587
The following BLAST results are available for this feature:
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