TCONS_00044737 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044737
Unique NameTCONS_00044737
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044737 ID=TCONS_00044737|Name=TCONS_00044737|organism=Clytia hemisphaerica|type=transcript|length=410bp
ATTGAGCTATGGAGACTTAACTTAACAAGTTTTAAGGGTGTGAACttgcg
agaaaaaaaaatcagctgAATCAGGCCGAGTTATGATCGCAATTTACATT
GTTTTGTTAGGTTCCATTTTGGTCCAAAATCGGTCGCTTGAAGAGAAATC
AAGTTCCAAAGAGTTCTGGCAAGTTTGGTACTTCAGACAAATCGCCGTCA
TGTGGTCGCCTTGTTTGTGATATCAAAATCAGCGCTAAAGAATTAATCCG
CTGTAAAAGCTATGATTTCAAAGaatTGGTGTCGGTCATTTTGAACAATG
AAAGAAATGATTTGTTACCAGAAGATATTCCGGTCAAATTAAGgAAAACG
GATACTTTGATGAGCATGATTTGGGAAAATAGGATGGATGCGATTTATAA
CCTTCAAATC
Run BLAST on NCBI

transcript from alignment at sc0006115:335..2552+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044737 ID=TCONS_00044737|Name=TCONS_00044737|organism=Clytia hemisphaerica|type=transcript|length=2218bp|location=Sequence derived from alignment at sc0006115:335..2552+ (Clytia hemisphaerica)
ATTGAGCTATGGAGACTTAACTTAACAAGTTTTAAGGGTGTGAACttgcg
agaaaaaaaaatcagctgAATCAGGCCGAGTTATGATCGCAATTTACATT
GTTTTGTTAGGTTCCATTTTGGTCCAAAATCGGTCGCTTGAAGAGAAATC
AAGTTCCAAAGGTAGTAGttattcatttattcattataATTCAAGCAATT
CTTTCTAAAATTTCTTGCCCTGTACAATATGAATTTTGCACCTTGGGAAA
CTAGCCACcgaataatgtttttttttgcgcTCATTTCGGTTGTCTCTATT
TTTCCTTAACCGTATACGTCCAATCTATCAAAACACAAAACTAAGAAACC
TTGAAAGCCTATATCAActtcaaataagtttttttcaCTGTTTAGAATTT
ATCCTCTTTTTTAGAGTTCTGGCAAGTTTGGTACTTCAGACAAATCGCCG
TCATGTGGTCGCCTTGTTTGTGATATCAAAATCAGCGCTAAAGAATTAAT
CCGCTGTAAAAGCTATGATTTCAAAGGTAGGAACAAGTTGacacattttc
tttttgaatatgaCTTTTTTATCACATGATAAAAGTTACcggaaaatttc
gaaaatatgTTCTACTTTGCTTTGTAATATCCATTTTCCTTCTCAGACGA
taaaccttgctttgaccacttcaattaaaaattacagatttaccgttttc
ttttcttttcaagaatTGGTGTCGGTCATTTTGAACAATGAAAGAAATGA
TTTGTTACCAGAAGATATTCCGGTCAAATTAAGGTGCGTTTGTCCACAGA
TGTTCAGAATTTAGACTATGCTCAGACGTTATGTTTCGTATCGTTCCGGC
ATGCTTTCCGTTACCGATCGAGATTGTTCATATTGGTTctggaacgtttc
ggagcaagaaaacggggTAGTTCCGTTTCGATGGAAAAactggagcgaaa
ccgttttgatctgttttcctttgtaacgtcttcttttttgacgtttcgaa
ttttgacgttcacacttgtttcggaaccgtttcgtttcggaatgatacgg
aaccgtaacgtgtgaacatggtcttagactcagggttcccagcggtcagg
gaaaacctggaaaaaggctgtttttggaaaaagtcaggaaaagtcaggga
aagtcagggaaaatctgaaaaaatggACGAAAGTCAGGGAAAACTCAGGG
AATTTTCTCAAAGGTTGagttataatttcaaaatcaacaatTAATTTTAA
TTATCCATTTCATCTTGGATTCTGTTATTTTTATTGTAGGGTAGTTTCTC
GAGAAAGAcaacttaaaaacaaaatttattcaGTTCTGTGTGTAAAAACA
ACTTTATTAATTTCCTATGACCTTTACAACTGTGGAAATAATGGTCAGGG
AAAAAAGTATGGAATTTAGTCCAGGTCATGGAAAAAGGCACATTTTCACG
TGTGAAAGTCATGGGAAAAGGCCCTTTTTAGGgaaaaaatcagggaaaat
attttctctaaaGCAGTGGGAACCCATAGTGACAGTTCAGTTTGGAGGAT
ATCATTATATGCTTCACATAAAAAATGAACCAAGGCAACGACAACGGCAG
CCTTTGtgacaaaataataaaaacaagaaagttttacaaaataCTCGACT
CGATGCTTAACTTAGATAGTACCAATTCGACACGACAAGcccattttgat
ttcaaaataaccatttttttgAAGCTGCCGGGAACGAATTTTGCTTCATG
GTTCAGCTTTTGATCCAAATAATGTCAGGACaaaccagtccaacatttca
CCCAACATACGCAAAAATGGCGCAAATATTAGATGACGAACATCATCCAA
TACGtgttttttccttcttttaaattttacattGGTACAAACCGAAAGAT
GgtatgttggatgaaaatgttgGACCGGTTTACCATGGTCTttataaatt
tcattaatttcttgttttttttttctcataggAAAACGGATACTTTGATG
AGCATGATTTGGGAAAATAGGGTATGATTGACGAGTTACTTTCACAAAGT
TCAGTAGACATTagtctttaattttttttatccttaTAACCTTAGCCGAA
TGCTCTACCTTTACACTACGGCTCACCAATTCAATGTGATGGTAGTGAAA
CTTTAAATTCTTTAATATTTGATATTTCCACTAAACACTAGATGGATGCG
ATTTATAACCTTCAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028351XLOC_028351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044737-exon-sc0006115-1491911889:335..495TCONS_00044737-exon-sc0006115-1491911889:335..495Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1510915933:335..495TCONS_00044737-exon-sc0006115-1510915933:335..495Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1575043694:335..495TCONS_00044737-exon-sc0006115-1575043694:335..495Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1491911889:749..860TCONS_00044737-exon-sc0006115-1491911889:749..860Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1510915933:749..860TCONS_00044737-exon-sc0006115-1510915933:749..860Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1575043694:749..860TCONS_00044737-exon-sc0006115-1575043694:749..860Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1491911889:1048..1117TCONS_00044737-exon-sc0006115-1491911889:1048..1117Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1510915933:1048..1117TCONS_00044737-exon-sc0006115-1510915933:1048..1117Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1575043694:1048..1117TCONS_00044737-exon-sc0006115-1575043694:1048..1117Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1491911889:2316..2355TCONS_00044737-exon-sc0006115-1491911889:2316..2355Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1510915933:2316..2355TCONS_00044737-exon-sc0006115-1510915933:2316..2355Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1575043694:2316..2355TCONS_00044737-exon-sc0006115-1575043694:2316..2355Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1491911889:2526..2552TCONS_00044737-exon-sc0006115-1491911889:2526..2552Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1510915933:2526..2552TCONS_00044737-exon-sc0006115-1510915933:2526..2552Clytia hemisphaericaexon
TCONS_00044737-exon-sc0006115-1575043694:2526..2552TCONS_00044737-exon-sc0006115-1575043694:2526..2552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006115supercontigsc0006115:335..2552 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.235453	0	1.60661	0.980997	2.30439	7.03704	3.0862	3.04944	3.93395	3.02464	3.76723	3.56763	0	0	0	0.148307	0	0	0	0	0	0	2.97638	11.4778	0	0	0	0
Blast
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BLAST of TCONS_00044737 vs. Swiss-Prot (Human)
Match: DPOLA (DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 6.465e-23
Identity = 47/102 (46.08%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  105 C*VPFWSKIGRLKRNQVPKSSGKFGTSDKSPSCGRLVCDIKISAKELIRCKSYDFKELVSVILNNERNDLLPEDIPVKLRKTDTLMSMIWENRMDAIYNLQI 410
            C  P WSKIGRLKR+ +PK  G+ G  +++ +CGR++CD++ISAKELIRCKSY   ELV  IL  ER  +  E+I     ++  L+ ++     DA + LQI
Sbjct:  654 CKAPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQNMYSESSQLLYLLEHTWKDAKFILQI 755
The following BLAST results are available for this feature:
BLAST of TCONS_00044737 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DPOLA6.465e-2346.08DNA polymerase alpha catalytic subunit OS=Homo sap... [more]
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