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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044744 ID=TCONS_00044744|Name=TCONS_00044744|organism=Clytia hemisphaerica|type=transcript|length=1643bp
TCAGGCTTCTGAAAAAGTACCGTCGCAACCACCAAAAACCGTCAAAGAAA
AGCGTCTACCGTCAATCAATACTTTCATTCGGCGACATGACGACGACGGT
TCTGGTAATCATCAGCAGcaaaatctttttcaacaaTTATCACCAAAGAA
GAACCCTCCTTTACCAAACATTTCTGTTGATCAACACGCTTCACCACCAC
AACCTGACATTGGAAACCAACCGGAAACCAAAGGTGCAGATTCAACATCA
TTTCAGGACGTTTCAATGAGCCAATGGGATCCAGACGTTTTGAGTGAGCT
ACCTGAACACATACAACAAGAATTGAAACAGCAAATGAAAATACATATCA
ATATAATATCAACATTAACAACAAGCAGCGTTCCGTCCAAAATCAATACA
AGTCCATCAACATCGAAGACAAGCAAAGCAAACACTAACAGTCCTTCCGC
CAAATCAAGAAGTAATGCTAAAATCTATGCTAATCAAAACCAtaaaaaca
tcttcaaaaaggGTCGTGGACGgccaaagaaaattgataagaTTTTTACA
GATTCGAATAAGTATGGAACTATTCTTGATACTATGAGTGCAACAAGACT
TGTGAAATCGAATAAAGGTCCACAAGAAGTAGTTGAGGAAATACAAACCA
ACACTGCTTCACAAAGACCAGGGCTCCTATCTCCAGAAAGAGTTGACATG
GATGTTTTAAATGAACTACCTGAGGAAATTCGTAATCAGATTTGGAACGA
TTTGAAAAAGACGTCAGTCAATTTCAAGAaaccaaaatcaaatcatcagC
CTGTTGCCTCGTCTTTGTCAACTTTACCGGGCAGATGTTCAACTACTTCT
ACCTCCACCACCATTGGAAATACTAAAAATGTTAATCAACTTCCATCTTC
TTCGAGTTCTAAACATGGCCACTCTCCTGCCAAGCAGAACTCTATTCAGA
AAGATACGTTCAGCTCTTCATCACTGAATAAAGATGTCAGTAACCATTTA
TCCGTTGAACAGGCTTCAGGTTTAGTGAAGGCAAGCTCTACAGGGAGTTC
TGCAGCTTCCCCTATAAGAATAGACACCGGGTCAACCAGGTTGATACAGA
GACAAGTTATTCCTGATATTGTGCCACCCTCACAGCTGGATGCTTCGTTT
TTAAGAGCACTTCCTGAAGAAATGAGAGCAGAAATATTGGAAGAATCGAG
AAACGTCAAAAAGAAAAGACCGTCAGATGACGTTATATCTATAGGGAAAA
GAACTAAAACAGTAGCTTCTTGTGATGAAAGATTACCGGATATGGAaatt
gctgaatcagcagattCCAACGACAAACAAAAAACGTGTGTTGAGGATAT
GATGCTTTTATCTCCTTCAGCTATGGATCAAAGTGTTTTAGAAGCCTTAC
CAAATACGATTAGAAATGAGATTTTAAACGAATCAAAACAGCGGAAAATA
TCACGTGATCAATTCACTATCCAATCAAAACAACAGACAGCAAAATTAAT
TTCTACCGACAATAGAATAGCAAAGGAAAACATTTTCCCAATAAATAATG
ATGTAGAGAGGCGTGCTGAGAAGTTGATTCAAGTTTTACCAGCTTTCCAT
GGAGCCAAAACGTATGAAGAAGTGAAAAGTTTGTTACGTGAAT Run BLAST on NCBI protein sequence of TCONS_00044744-protein >TCONS_00044744-protein ID=TCONS_00044744-protein|Name=TCONS_00044744-protein|organism=Clytia hemisphaerica|type=polypeptide|length=547bp
QASEKVPSQPPKTVKEKRLPSINTFIRRHDDDGSGNHQQQNLFQQLSPKK
NPPLPNISVDQHASPPQPDIGNQPETKGADSTSFQDVSMSQWDPDVLSEL
PEHIQQELKQQMKIHINIISTLTTSSVPSKINTSPSTSKTSKANTNSPSA
KSRSNAKIYANQNHKNIFKKGRGRPKKIDKIFTDSNKYGTILDTMSATRL
VKSNKGPQEVVEEIQTNTASQRPGLLSPERVDMDVLNELPEEIRNQIWND
LKKTSVNFKKPKSNHQPVASSLSTLPGRCSTTSTSTTIGNTKNVNQLPSS
SSSKHGHSPAKQNSIQKDTFSSSSLNKDVSNHLSVEQASGLVKASSTGSS
AASPIRIDTGSTRLIQRQVIPDIVPPSQLDASFLRALPEEMRAEILEESR
NVKKKRPSDDVISIGKRTKTVASCDERLPDMEIAESADSNDKQKTCVEDM
MLLSPSAMDQSVLEALPNTIRNEILNESKQRKISRDQFTIQSKQQTAKLI
STDNRIAKENIFPINNDVERRAEKLIQVLPAFHGAKTYEEVKSLLRE Run BLAST on NCBI transcript from alignment at sc0006124:2..1926- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044744 ID=TCONS_00044744|Name=TCONS_00044744|organism=Clytia hemisphaerica|type=transcript|length=1925bp|location=Sequence derived from alignment at sc0006124:2..1926- (Clytia hemisphaerica)
TCAGGCTTCTGAAAAAGTACCGTCGCAACCACCAAAAACCGTCAAAGAAA
AGCGTCTACCGTCAATCAATACTTTCATTCGGCGACATGACGACGACGGT
TCTGGTAATCATCAGCAGCAAAATCTTTTTCAACAATTATCACCAAAGAA
GAACCCTCCTTTACCAAACATTTCTGTTGATCAACACGCTTCACCACCAC
AACCTGACATTGGAAACCAACCGGAAACCAAAGGTGCAGATTCAACATCA
TTTCAGGTAAGACAGACTGTTCTATTTTTTTCTTGCCACTCTCATCTCAG
CCTAATCAAATTGTTCCTAAAATTGAGGTTTTGTAAGCTATTGACCACTT
CATATCAACATAACAAACACCTAAGTTAGCTAAGTTTTAAAAGCGACTTG
GACTTTGATAATTATATCAATCGTCCTCTTCCATTTTTACAGGACATTTC
AATGAGCCAATGGGATCCAGACGTTTTGAGTGAGCTACCTGAACACATAC
AACAAGAATTGAAACAGCAAATGAAAATACACAANCAGGACGTTTCAATG
AGCCAATGGGATCCAGACGTTTTGAGTGAGCTACCTGAACACATACAACA
AGAATTGAAACAGCAAATGAAAATACATATCAATATAATATCAACATTAA
CAACAAGCAGCGTTCCGTCCAAAATCAATACAAGTCCATCAACATCGAAG
ACAAGCAAAGCAAACACTAACAGTCCTTCCGCCAAATCAAGAAGTAATGC
TAAAATCTATGCTAATCAAAACCATAAAAACATCTTCAAAAAGGGTCGTG
GACGGCCAAAGAAAATTGATAAGATTTTTACAGATTCGAATAAGTATGGA
ACTATTCTTGATACTATGAGTGCAACAAGACTTGTGAAATCGAATAAAGG
TCCACAAGAAGTAGTTGAGGAAATACAAACCAACACTGCTTCACAAAGAC
CAGGGCTCCTATCTCCAGAAAGAGTTGACATGGATGTTTTAAATGAACTA
CCTGAGGAAATTCGTAATCAGATTTGGAACGATTTGAAAAAGACGTCAGT
CAATTTCAAGAAACCAAAATCAAATCATCAGCCTGTTGCCTCGTCTTTGT
CAACTTTACCGGGCAGATGTTCAACTACTTCTACCTCCACCACCATTGGA
AATACTAAAAATGTTAATCAACTTCCATCTTCTTCGAGTTCTAAACATGG
CCACTCTCCTGCCAAGCAGAACTCTATTCAGAAAGATACGTTCAGCTCTT
CATCACTGAATAAAGATGTCAGTAACCATTTATCCGTTGAACAGGCTTCA
GGTTTAGTGAAGGCAAGCTCTACAGGGAGTTCTGCAGCTTCCCCTATAAG
AATAGACACCGGGTCAACCAGGTTGATACAGAGACAAGTTATTCCTGATA
TTGTGCCACCCTCACAGCTGGATGCTTCGTTTTTAAGAGCACTTCCTGAA
GAAATGAGAGCAGAAATATTGGAAGAATCGAGAAACGTCAAAAAGAAAAG
ACCGTCAGATGACGTTATATCTATAGGGAAAAGAACTAAAACAGTAGCTT
CTTGTGATGAAAGATTACCGGATATGGAAATTGCTGAATCAGCAGATTCC
AACGACAAACAAAAAACGTGTGTTGAGGATATGATGCTTTTATCTCCTTC
AGCTATGGATCAAAGTGTTTTAGAAGCCTTACCAAATACGATTAGAAATG
AGATTTTAAACGAATCAAAACAGCGGAAAATATCACGTGATCAATTCACT
ATCCAATCAAAACAACAGACAGCAAAATTAATTTCTACCGACAATAGAAT
AGCAAAGGAAAACATTTTCCCAATAAATAATGATGTAGAGAGGCGTGCTG
AGAAGTTGATTCAAGTTTTACCAGCTTTCCATGGAGCCAAAACGTATGAA
GAAGTGAAAAGTTTGTTACGTGAAT Coding sequence (CDS) from alignment at sc0006124:2..1926- >TCONS_00044744 ID=TCONS_00044744|Name=TCONS_00044744|organism=Clytia hemisphaerica|type=CDS|length=3282bp|location=Sequence derived from alignment at sc0006124:2..1926- (Clytia hemisphaerica)
GACGTTTCAATGAGCCAATGGGATCCAGACGTTTTGAGTGAGCTACCTGA
ACACATACAACAAGAATTGAAACAGCAAATGAAAATACATATCAATATAA
TATCAACATTAACAACAAGCAGCGTTCCGTCCAAAATCAATACAAGTCCA
TCAACATCGAAGACAAGCAAAGCAAACACTAACAGTCCTTCCGCCAAATC
AAGAAGTAATGCTAAAATCTATGCTAATCAAAACCATAAAAACATCTTCA
AAAAGGGTCGTGGACGGCCAAAGAAAATTGATAAGATTTTTACAGATTCG
AATAAGTATGGAACTATTCTTGATACTATGAGTGCAACAAGACTTGTGAA
ATCGAATAAAGGTCCACAAGAAGTAGTTGAGGAAATACAAACCAACACTG
CTTCACAAAGACCAGGGCTCCTATCTCCAGAAAGAGTTGACATGGATGTT
TTAAATGAACTACCTGAGGAAATTCGTAATCAGATTTGGAACGATTTGAA
AAAGACGTCAGTCAATTTCAAGAAACCAAAATCAAATCATCAGCCTGTTG
CCTCGTCTTTGTCAACTTTACCGGGCAGATGTTCAACTACTTCTACCTCC
ACCACCATTGGAAATACTAAAAATGTTAATCAACTTCCATCTTCTTCGAG
TTCTAAACATGGCCACTCTCCTGCCAAGCAGAACTCTATTCAGAAAGATA
CGTTCAGCTCTTCATCACTGAATAAAGATGTCAGTAACCATTTATCCGTT
GAACAGGCTTCAGGTTTAGTGAAGGCAAGCTCTACAGGGAGTTCTGCAGC
TTCCCCTATAAGAATAGACACCGGGTCAACCAGGTTGATACAGAGACAAG
TTATTCCTGATATTGTGCCACCCTCACAGCTGGATGCTTCGTTTTTAAGA
GCACTTCCTGAAGAAATGAGAGCAGAAATATTGGAAGAATCGAGAAACGT
CAAAAAGAAAAGACCGTCAGATGACGTTATATCTATAGGGAAAAGAACTA
AAACAGTAGCTTCTTGTGATGAAAGATTACCGGATATGGAAATTGCTGAA
TCAGCAGATTCCAACGACAAACAAAAAACGTGTGTTGAGGATATGATGCT
TTTATCTCCTTCAGCTATGGATCAAAGTGTTTTAGAAGCCTTACCAAATA
CGATTAGAAATGAGATTTTAAACGAATCAAAACAGCGGAAAATATCACGT
GATCAATTCACTATCCAATCAAAACAACAGACAGCAAAATTAATTTCTAC
CGACAATAGAATAGCAAAGGAAAACATTTTCCCAATAAATAATGATGTAG
AGAGGCGTGCTGAGAAGTTGATTCAAGTTTTACCAGCTTTCCATGGAGCC
AAAACGTATGAAGAAGTGAAAAGTTTGTTACGTGAACAGGCTTCTGAAAA
AGTACCGTCGCAACCACCAAAAACCGTCAAAGAAAAGCGTCTACCGTCAA
TCAATACTTTCATTCGGCGACATGACGACGACGGTTCTGGTAATCATCAG
CAGCAAAATCTTTTTCAACAATTATCACCAAAGAAGAACCCTCCTTTACC
AAACATTTCTGTTGATCAACACGCTTCACCACCACAACCTGACATTGGAA
ACCAACCGGAAACCAAAGGTGCAGATTCAACATCATTTCAGGACGTTTCA
ATGAGCCAATGGGATCCAGACGTTTTGAGTGAGCTACCTGAACACATACA
ACAAGAATTGAAACAGCAAATGAAAATACATATCAATATAATATCAACAT
TAACAACAAGCAGCGTTCCGTCCAAAATCAATACAAGTCCATCAACATCG
AAGACAAGCAAAGCAAACACTAACAGTCCTTCCGCCAAATCAAGAAGTAA
TGCTAAAATCTATGCTAATCAAAACCATAAAAACATCTTCAAAAAGGGTC
GTGGACGGCCAAAGAAAATTGATAAGATTTTTACAGATTCGAATAAGTAT
GGAACTATTCTTGATACTATGAGTGCAACAAGACTTGTGAAATCGAATAA
AGGTCCACAAGAAGTAGTTGAGGAAATACAAACCAACACTGCTTCACAAA
GACCAGGGCTCCTATCTCCAGAAAGAGTTGACATGGATGTTTTAAATGAA
CTACCTGAGGAAATTCGTAATCAGATTTGGAACGATTTGAAAAAGACGTC
AGTCAATTTCAAGAAACCAAAATCAAATCATCAGCCTGTTGCCTCGTCTT
TGTCAACTTTACCGGGCAGATGTTCAACTACTTCTACCTCCACCACCATT
GGAAATACTAAAAATGTTAATCAACTTCCATCTTCTTCGAGTTCTAAACA
TGGCCACTCTCCTGCCAAGCAGAACTCTATTCAGAAAGATACGTTCAGCT
CTTCATCACTGAATAAAGATGTCAGTAACCATTTATCCGTTGAACAGGCT
TCAGGTTTAGTGAAGGCAAGCTCTACAGGGAGTTCTGCAGCTTCCCCTAT
AAGAATAGACACCGGGTCAACCAGGTTGATACAGAGACAAGTTATTCCTG
ATATTGTGCCACCCTCACAGCTGGATGCTTCGTTTTTAAGAGCACTTCCT
GAAGAAATGAGAGCAGAAATATTGGAAGAATCGAGAAACGTCAAAAAGAA
AAGACCGTCAGATGACGTTATATCTATAGGGAAAAGAACTAAAACAGTAG
CTTCTTGTGATGAAAGATTACCGGATATGGAAATTGCTGAATCAGCAGAT
TCCAACGACAAACAAAAAACGTGTGTTGAGGATATGATGCTTTTATCTCC
TTCAGCTATGGATCAAAGTGTTTTAGAAGCCTTACCAAATACGATTAGAA
ATGAGATTTTAAACGAATCAAAACAGCGGAAAATATCACGTGATCAATTC
ACTATCCAATCAAAACAACAGACAGCAAAATTAATTTCTACCGACAATAG
AATAGCAAAGGAAAACATTTTCCCAATAAATAATGATGTAGAGAGGCGTG
CTGAGAAGTTGATTCAAGTTTTACCAGCTTTCCATGGAGCCAAAACGTAT
GAAGAAGTGAAAAGTTTGTTACGTGAACAGGCTTCTGAAAAAGTACCGTC
GCAACCACCAAAAACCGTCAAAGAAAAGCGTCTACCGTCAATCAATACTT
TCATTCGGCGACATGACGACGACGGTTCTGGTAATCATCAGCAGCAAAAT
CTTTTTCAACAATTATCACCAAAGAAGAACCCTCCTTTACCAAACATTTC
TGTTGATCAACACGCTTCACCACCACAACCTGACATTGGAAACCAACCGG
AAACCAAAGGTGCAGATTCAACATCATTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044744-exon-sc0006124-1575043694:1671..1926 | TCONS_00044744-exon-sc0006124-1575043694:1671..1926 | Clytia hemisphaerica | exon |
| TCONS_00044744-exon-sc0006124-1575043694:2..1388 | TCONS_00044744-exon-sc0006124-1575043694:2..1388 | Clytia hemisphaerica | exon |
| TCONS_00044744-exon-sc0006124-1510915933:1671..1926 | TCONS_00044744-exon-sc0006124-1510915933:1671..1926 | Clytia hemisphaerica | exon |
| TCONS_00044744-exon-sc0006124-1510915933:2..1388 | TCONS_00044744-exon-sc0006124-1510915933:2..1388 | Clytia hemisphaerica | exon |
| TCONS_00044744-exon-sc0006124-1491911889:1671..1926 | TCONS_00044744-exon-sc0006124-1491911889:1671..1926 | Clytia hemisphaerica | exon |
| TCONS_00044744-exon-sc0006124-1491911889:2..1388 | TCONS_00044744-exon-sc0006124-1491911889:2..1388 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006124 | supercontig | sc0006124:2..1926 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025527 | DUF4414 |
Blast
The following BLAST results are available for this feature:
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