TCONS_00044785 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044785
Unique NameTCONS_00044785
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length392

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044785 ID=TCONS_00044785|Name=TCONS_00044785|organism=Clytia hemisphaerica|type=transcript|length=392bp
GCTCATAATAATTGCAAAATGAAATATGAATTTACCTTCattgtaaaaat
ctttttttctttcatttctttcCGAATTATACTTTACAAACTTTATGCAT
GGTTTGATATCTAATTTatgtaaatttttgtttcagttttttcatgtgtt
caaaaaatttcttcttgaGTGCTTTCAAATAATCTTTCCATGAACCTCTG
AAGGTTGGAAGTGTCCAGGTTGGTTtcggttcttttgttttccttgtGGT
CGGTTGAGAAGTTAATCGTTGTTGTGTAGTTGGAAGGGGTGGTGAAGGTG
GCTTGCTACTTGGGATTGGTGGGGATCCAGGTAGAGGCGGTTGTCCACTA
GGGAGGGGTGGGTAACCGCTAGGGAGGGGAGGGTGACCGCTA
Run BLAST on NCBI

transcript from alignment at sc0006209:32..423

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044785 ID=TCONS_00044785|Name=TCONS_00044785|organism=Clytia hemisphaerica|type=transcript|length=392bp|location=Sequence derived from alignment at sc0006209:32..423 (Clytia hemisphaerica)
TAGCGGTCACCCTCCCCTCCCTAGCGGTTACCCACCCCTCCCTAGTGGAC
AACCGCCTCTACCTGGATCCCCACCAATCCCAAGTAGCAAGCCACCTTCA
CCACCCCTTCCAACTACACAACAACGATTAACTTCTCAACCGACCacaag
gaaaacaaaagaaccgaAACCAACCTGGACACTTCCAACCTTCAGAGGTT
CATGGAAAGATTATTTGAAAGCACtcaagaagaaattttttgaacacatg
aaaaaactgaaacaaaaatttacatAAATTAGATATCAAACCATGCATAA
AGTTTGTAAAGTATAATTCGgaaagaaatgaaagaaaaaaagatttttac
aatGAAGGTAAATTCATATTTCATTTTGCAATTATTATGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028396XLOC_028396Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044785-exon-sc0006209-1491911889:32..423TCONS_00044785-exon-sc0006209-1491911889:32..423Clytia hemisphaericaexon
TCONS_00044785-exon-sc0006209-1510915933:32..423TCONS_00044785-exon-sc0006209-1510915933:32..423Clytia hemisphaericaexon
TCONS_00044785-exon-sc0006209-1575043694:32..423TCONS_00044785-exon-sc0006209-1575043694:32..423Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006209supercontigsc0006209:32..423 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.193867	0	0.219507	0.859012	0	0.206594	0.747742	1.40005	1.14358	1.82122	1.76772	1.42026	11.862	13.2561	0.880675	0.590687	9.60535	9.39766	63.4743	47.4438	29.241	29.6226	8.89138	9.70027	26.8509	28.2365	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044785 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top