TCONS_00044792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044792
Unique NameTCONS_00044792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044792 ID=TCONS_00044792|Name=TCONS_00044792|organism=Clytia hemisphaerica|type=transcript|length=718bp
TCTGCAACCGTATGTTTCTTTTACTCCATGATGTGGGGGCCGCGTCGTTC
GAACGAATGGCTTGTCTCGATGTTCACTGGTTTCTTTCAATCTGTCATTG
TTATTCAACCCGTCAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCCATT
TTGCGAAAACCCGTCAAACACGACGTCACTCTGCTTGATGATGACGATAA
GATAGAGGAGGAGAGAAATGAACAGACAAAGCATTCGACACGTCCGACAG
AAACTTTAGATGAGAAATTAATTCTTGAAGCGACAGAGGACGAAGATGGA
ATTATCACTGCTGATGAAGTACCAGTTATCATGCCAACGGACAGCGAGAT
GGCGCGCGCACGTAAGATGAAGTTGAGAGAGAAGATGTCGAGTGTTGTGC
TCAAAGACATCCTCATCTATCTTTTTTTCCTATTGATTGTCGCAAATCTG
TCGTACTCAGAGAAGGACAAGCACATGTTTATTTACCGACGTGATTTGGT
CAATATGTTTGAAAGGTCCCGATACACCAGTGGTATCCACTTCGATGCGA
TCAGTAACCCTGGTCTGGTGTACACGTGGTTACAAGATACCCTCGTTCCC
AGTATCTTCGGTGGTCCCTGGTATAATGATGAAGAACCCAACATTCCAGG
GTTTATTGAGAATCACGAGAACTTTTTAATCAGTATCCCGAGGATTCGCC
AACTTCGTGTCAAGAAAA
Run BLAST on NCBI

protein sequence of TCONS_00044792-protein

>TCONS_00044792-protein ID=TCONS_00044792-protein|Name=TCONS_00044792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
SATVCFFYSMMWGPRRSNEWLVSMFTGFFQSVIVIQPVKAVFVAVLFAAI
LRKPVKHDVTLLDDDDKIEEERNEQTKHSTRPTETLDEKLILEATEDEDG
IITADEVPVIMPTDSEMARARKMKLREKMSSVVLKDILIYLFFLLIVANL
SYSEKDKHMFIYRRDLVNMFERSRYTSGIHFDAISNPGLVYTWLQDTLVP
SIFGGPWYNDEEPNIPGFIENHENFLISIPRIRQLRVKK
Run BLAST on NCBI

transcript from alignment at sc0006223:235..2240-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044792 ID=TCONS_00044792|Name=TCONS_00044792|organism=Clytia hemisphaerica|type=transcript|length=2006bp|location=Sequence derived from alignment at sc0006223:235..2240- (Clytia hemisphaerica)
TCTGCAACCGTATGTTTCTTTTACTCCATGATGTGGGGGCCGCGTCGTTC
GAACGAATGGCTTGTCTCGATGTTCACTGGTTTCTTTCAATCTGTCATTG
TTATTCAACCCGTCAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCCATT
TTGCGAAAACCCGTCAAACACGACGTCACTCTGCTTGATGATGACGATAA
GATAGAGGAGGAGAGAAATGAACAGACAAAGGTTCAATCAGTAACATGTT
TCCAAATTTTCATCCAAATGATTCTTCCGTACAGCTTCTTGTTTGTTTAA
ATAACCACTCCCCCCCCACCTCTTAAAGGGGAGGCGTCGTTTATTCGATG
TAATACACTCTTTACTCTTAGATTCCAAATAAACGGCCCCCCTCCCGCTT
GTTAATGTTCGAAAATTTTCGAACCATCCCTCCTCCGGACCTTATTAGGA
CCCCACTCACGTTTATTAATTTTTAAGTATATTTTCAGCTGTCAAAGAGA
AGGACCCTTATTTTGCTCTAAATAGCCTGAGTTTAGCCTATATTTACCTT
ATTTTTGGGTTTTCAGAAGTACAATTTCCAACCCCCGGCAATTAGCCACC
CCCTCGTTTATTAGAATCTCGAAAATTTTCCAACCCTCCCCCGTTTATTC
GAACCCAGCCCCCCGCTACGTTTATTTGGAACCTAAGAGTAATGGTGATC
TAATAAGCAAGAAAGTAATTATTTTATCGGTGTCTTTCGAGTATTACATA
AATGAGTGGAGAAAGCTGCTAGTTTAGTATTAGAGACGAATTCAACTTTG
ACTATTTACATCCTCATAAAAGTGGACCGCCGAATGGCTTTTCTTTATCT
TTCAGCATTCGACACGTCCGACAGAAACTTTAGATGAGAAATTAATTCTT
GAAGCGACAGAGGACGAAGATGGAATTATCACTGCTGATGAAGTACCAGT
TATCATGTAAGCTTCGACATCTTTTGTCCATGTTGGGTTCGGGGAATTCA
AGCCTCCTGGGACATTTGCAGTTTGTGAAAATTATGAGTCATCAAAAGAA
AGAAGAAATACTTTGCACATTGTTTTTGCCTCATATATGTGTGAAATAAA
GTCGGTCATTTAAAGGGATGCTTGTGGATGAGCTGAGGGAAAAGAACGTA
CCCCACGGTATAGGGTATTATGGGTTCTACTTTATTCAATGTTTTTTCTA
CTGCTTCCAATTTACTCTTTTATTTGGAATAAGAATGAGAATTACCCATA
CTTGAAATTGGATGAGCGAGACATCAGATGAAAATCATGTTTTTTTCTCG
TCAGGCCAACGGACAGCGAGATGGCGCGCGCACGTAAGATGAAGTTGAGA
GAGAAGATGTCGAGTGTTGTGCTCAAAGACATCCTCATCTATCTTTTTTT
CCTATTGATTGTCGCAAATCTGTCGTACTCAGAGAAGGACAAGCACATGT
TTATTTACCGACGTGATTTGGTCAATATGTTTGAAAGGTCCCGATACACC
AGTGGTATCCACTTCGATGCGGTAAGAATGTCATCTGCGAAATTTAAGAA
TGAGAGCATCTTAATTTTTTTTTCAAACCCTGCTTTTTGGTAACATGTAA
GCCTTAGGAAACATTTTTCAATTTTTATATTGATTTGAACTATTGCGTTC
ACTAGAAATTATATATTATTGAAAATAAGTTCAAATCAAAATTCCTATCT
AAAAACTGGTGTGGCTGCTTTACTTATAAGGACGCTAAGTTTGTGTTTGT
TTTTTAGTTCTTATATAATCACCTGTATAATTCTGTTTTTCAGCTCTCCT
ACAGTTTCTAGTTTGTCTTTTTATTCCACTTCTATAGATCAGTAACCCTG
GTCTGGTGTACACGTGGTTACAAGATACCCTCGTTCCCAGTATCTTCGGT
GGTCCCTGGTATAATGATGAAGAACCCAACATTCCAGGGTTTATTGAGAA
TCACGAGAACTTTTTAATCAGTATCCCGAGGATTCGCCAACTTCGTGTCA
AGAAAA

Coding sequence (CDS) from alignment at sc0006223:235..2240-

>TCONS_00044792 ID=TCONS_00044792|Name=TCONS_00044792|organism=Clytia hemisphaerica|type=CDS|length=2868bp|location=Sequence derived from alignment at sc0006223:235..2240- (Clytia hemisphaerica)
ATCAGTAACCCTGGTCTGGTGTACACGTGGTTACAAGATACCCTCGTTCC
CAGTATCTTCGGTGGTCCCTGGTATAATGATGAAGAACCCAACATTCCAG
GGTTTATTGAGAATCACGAGAACTTTTTAATCAGTATCCCGAGGATTCGC
CAACTTCGTGTCAAGAAAGCCAACGGACAGCGAGATGGCGCGCGCACGTA
AGATGAAGTTGAGAGAGAAGATGTCGAGTGTTGTGCTCAAAGACATCCTC
ATCTATCTTTTTTTCCTATTGATTGTCGCAAATCTGTCGTACTCAGAGAA
GGACAAGCACATGTTTATTTACCGACGTGATTTGGTCAATATGTTTGAAA
GGTCCCGATACACCAGTGGTATCCACTTCGATGCGCATTCGACACGTCCG
ACAGAAACTTTAGATGAGAAATTAATTCTTGAAGCGACAGAGGACGAAGA
TGGAATTATCACTGCTGATGAAGTACCAGTTATCATTCTGCAACCGTATG
TTTCTTTTACTCCATGATGTGGGGGCCGCGTCGTTCGAACGAATGGCTTG
TCTCGATGTTCACTGGTTTCTTTCAATCTGTCATTGTTATTCAACCCGTC
AAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCCATTTTGCGAAAACCCGT
CAAACACGACGTCACTCTGCTTGATGATGACGATAAGATAGAGGAGGAGA
GAAATGAACAGACAAAGATCAGTAACCCTGGTCTGGTGTACACGTGGTTA
CAAGATACCCTCGTTCCCAGTATCTTCGGTGGTCCCTGGTATAATGATGA
AGAACCCAACATTCCAGGGTTTATTGAGAATCACGAGAACTTTTTAATCA
GTATCCCGAGGATTCGCCAACTTCGTGTCAAGAAAGCCAACGGACAGCGA
GATGGCGCGCGCACGTAAGATGAAGTTGAGAGAGAAGATGTCGAGTGTTG
TGCTCAAAGACATCCTCATCTATCTTTTTTTCCTATTGATTGTCGCAAAT
CTGTCGTACTCAGAGAAGGACAAGCACATGTTTATTTACCGACGTGATTT
GGTCAATATGTTTGAAAGGTCCCGATACACCAGTGGTATCCACTTCGATG
CGCATTCGACACGTCCGACAGAAACTTTAGATGAGAAATTAATTCTTGAA
GCGACAGAGGACGAAGATGGAATTATCACTGCTGATGAAGTACCAGTTAT
CATTCTGCAACCGTATGTTTCTTTTACTCCATGATGTGGGGGCCGCGTCG
TTCGAACGAATGGCTTGTCTCGATGTTCACTGGTTTCTTTCAATCTGTCA
TTGTTATTCAACCCGTCAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCC
ATTTTGCGAAAACCCGTCAAACACGACGTCACTCTGCTTGATGATGACGA
TAAGATAGAGGAGGAGAGAAATGAACAGACAAAGATCAGTAACCCTGGTC
TGGTGTACACGTGGTTACAAGATACCCTCGTTCCCAGTATCTTCGGTGGT
CCCTGGTATAATGATGAAGAACCCAACATTCCAGGGTTTATTGAGAATCA
CGAGAACTTTTTAATCAGTATCCCGAGGATTCGCCAACTTCGTGTCAAGA
AAGCCAACGGACAGCGAGATGGCGCGCGCACGTAAGATGAAGTTGAGAGA
GAAGATGTCGAGTGTTGTGCTCAAAGACATCCTCATCTATCTTTTTTTCC
TATTGATTGTCGCAAATCTGTCGTACTCAGAGAAGGACAAGCACATGTTT
ATTTACCGACGTGATTTGGTCAATATGTTTGAAAGGTCCCGATACACCAG
TGGTATCCACTTCGATGCGCATTCGACACGTCCGACAGAAACTTTAGATG
AGAAATTAATTCTTGAAGCGACAGAGGACGAAGATGGAATTATCACTGCT
GATGAAGTACCAGTTATCATTCTGCAACCGTATGTTTCTTTTACTCCATG
ATGTGGGGGCCGCGTCGTTCGAACGAATGGCTTGTCTCGATGTTCACTGG
TTTCTTTCAATCTGTCATTGTTATTCAACCCGTCAAAGCCGTCTTCGTCG
CCGTTCTTTTTGCCGCCATTTTGCGAAAACCCGTCAAACACGACGTCACT
CTGCTTGATGATGACGATAAGATAGAGGAGGAGAGAAATGAACAGACAAA
GATCAGTAACCCTGGTCTGGTGTACACGTGGTTACAAGATACCCTCGTTC
CCAGTATCTTCGGTGGTCCCTGGTATAATGATGAAGAACCCAACATTCCA
GGGTTTATTGAGAATCACGAGAACTTTTTAATCAGTATCCCGAGGATTCG
CCAACTTCGTGTCAAGAAAGCCAACGGACAGCGAGATGGCGCGCGCACGT
AAGATGAAGTTGAGAGAGAAGATGTCGAGTGTTGTGCTCAAAGACATCCT
CATCTATCTTTTTTTCCTATTGATTGTCGCAAATCTGTCGTACTCAGAGA
AGGACAAGCACATGTTTATTTACCGACGTGATTTGGTCAATATGTTTGAA
AGGTCCCGATACACCAGTGGTATCCACTTCGATGCGCATTCGACACGTCC
GACAGAAACTTTAGATGAGAAATTAATTCTTGAAGCGACAGAGGACGAAG
ATGGAATTATCACTGCTGATGAAGTACCAGTTATCATTCTGCAACCGTAT
GTTTCTTTTACTCCATGATGTGGGGGCCGCGTCGTTCGAACGAATGGCTT
GTCTCGATGTTCACTGGTTTCTTTCAATCTGTCATTGTTATTCAACCCGT
CAAAGCCGTCTTCGTCGCCGTTCTTTTTGCCGCCATTTTGCGAAAACCCG
TCAAACACGACGTCACTCTGCTTGATGATGACGATAAGATAGAGGAGGAG
AGAAATGAACAGACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028403XLOC_028403Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044792-exon-sc0006223-1575043694:2010..2240TCONS_00044792-exon-sc0006223-1575043694:2010..2240Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1575043694:1285..1385TCONS_00044792-exon-sc0006223-1575043694:1285..1385Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1575043694:720..936TCONS_00044792-exon-sc0006223-1575043694:720..936Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1575043694:235..403TCONS_00044792-exon-sc0006223-1575043694:235..403Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1510915933:2010..2240TCONS_00044792-exon-sc0006223-1510915933:2010..2240Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1510915933:1285..1385TCONS_00044792-exon-sc0006223-1510915933:1285..1385Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1510915933:720..936TCONS_00044792-exon-sc0006223-1510915933:720..936Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1510915933:235..403TCONS_00044792-exon-sc0006223-1510915933:235..403Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1491911889:2010..2240TCONS_00044792-exon-sc0006223-1491911889:2010..2240Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1491911889:1285..1385TCONS_00044792-exon-sc0006223-1491911889:1285..1385Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1491911889:720..936TCONS_00044792-exon-sc0006223-1491911889:720..936Clytia hemisphaericaexon
TCONS_00044792-exon-sc0006223-1491911889:235..403TCONS_00044792-exon-sc0006223-1491911889:235..403Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044792-proteinTCONS_00044792-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006223supercontigsc0006223:235..2240 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.667216	0.815632	0.552432	0.308839	0.281987	0.445659	0.179223	0.671145	0.293678	0.941325	0.77678	0.974828	0.774662	0.60727	0.579009	0.875628	0.676941	0.837814	0.398944	1.00794	1.68899	1.67641	1.48706	2.03439	7.84717	9.56939	0.76459	0.305997	0.232088	0.0788202
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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