TCONS_00044793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044793
Unique NameTCONS_00044793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044793 ID=TCONS_00044793|Name=TCONS_00044793|organism=Clytia hemisphaerica|type=transcript|length=263bp
caaaagttatgataaatttaagattttgggattttacagggttttagctg
gattttgNTTCGGAAGAATGTGTCAAAACATGCACTTTACCAATGTGATT
ATCGAAGCATTCGATGTCAATCGTGCTCACTACTTTATCGAGCCGATCCA
CTTTTGGTAAATTGTCatcaatgttttttgttttttcgtcTGCATCTTAA
ACCCTTAAACAATTTGCGTGAAAATATTGACAATTTGATTTAGGCTTATA
TTCATGAGAAGGA
Run BLAST on NCBI

transcript from alignment at sc0006224:1127..1389

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044793 ID=TCONS_00044793|Name=TCONS_00044793|organism=Clytia hemisphaerica|type=transcript|length=263bp|location=Sequence derived from alignment at sc0006224:1127..1389 (Clytia hemisphaerica)
TCCTTCTCATGAATATAAGCCTAAATCAAATTGTCAATATTTTCACGCAA
ATTGTTTAAGGGTTTAAGATGCAgacgaaaaaacaaaaaacattgatGAC
AATTTACCAAAAGTGGATCGGCTCGATAAAGTAGTGAGCACGATTGACAT
CGAATGCTTCGATAATCACATTGGTAAAGTGCATGTTTTGACACATTCTT
CCGAANcaaaatccagctaaaaccctgtaaaatcccaaaatcttaaattt
atcataacttttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028404XLOC_028404Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044793-exon-sc0006224-1491911889:1127..1389TCONS_00044793-exon-sc0006224-1491911889:1127..1389Clytia hemisphaericaexon
TCONS_00044793-exon-sc0006224-1510915933:1127..1389TCONS_00044793-exon-sc0006224-1510915933:1127..1389Clytia hemisphaericaexon
TCONS_00044793-exon-sc0006224-1575043694:1127..1389TCONS_00044793-exon-sc0006224-1575043694:1127..1389Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006224supercontigsc0006224:1127..1389 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.27542	3.05976	0.710535	3.47574	4.23137	1.33748	4.03402	9.06384	5.28817	3.93015	1.90735	2.0897	0.902332	8.66861	0.505141	0.764812	1.41328	0.965711	2.00127	0.698062	6.38863	1.77569	2.87811	4.57908	2.02129	3.00659	4.30242	0	2.78609	4.96752
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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