TCONS_00044804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044804
Unique NameTCONS_00044804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044804 ID=TCONS_00044804|Name=TCONS_00044804|organism=Clytia hemisphaerica|type=transcript|length=1746bp
AATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTT
CTGGAAGATCACTTTCGTCTACAATTGAAGGTTGTTCTTGATGCATAACG
AATGAAGCACTTTGTAGTGGTTGTTCTTCGACTGGTTCAGTATCTTCTGT
TGTAATTGTTTGTGTCCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTT
CTTCAGGAAAATCACTTTCGTCAACAATTGAAGGTTGTTCTTGAAGCATA
ACGAATGAAGCACTTTGTAGTGGTTGTTCTTCGGCTGGTTCAGTATCTTC
CGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTGGTNAGTATC
TTCCGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTGGTAGGT
CACCTTCTTCTGGAAGATCACTTTCGTCTACAATTGAAGGTTGTTCTTGA
AGCATAACGAATGAAGCACTTTGTAGTGGTTGTTCTTCGACTGGTTCAGT
ATCTTCTGTTATAATTGTCTGTGTTCTGGTGAAAGATTTGACTGTTGGTA
GGTCACCTTCTTCAGGAAAATCACTTTCGTCAACAATTGAAGGTTGTTCT
TGAAGCATAACGAATGAAGCACTTTGTAGTGGTTGTTCTTCGGCTGGTTC
AATATCTTCTGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTG
GTAGGTCACCTTCTTTCGGAAGATCACTTTCGTCAACAGCTAAAGATTGT
TCTTGAAGCATAACGAATGAAGCACTTTGTAGTGGTTGTTctttgactgg
tttagtatctTCCGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGGCTG
TTGGTAGGTCACCTTCTTCCGGAAGATCACTTTCGTCTACAATTGAAGGT
TGTTCTTGAAGCACGACAAAAGAAACACTTTGTAGTGGTTGTTCTTTGAG
TGGTTCAGTATCCTCTGTTGTAATTGTTTGTGTCCTGGTGAAAGATTTGG
CTGTTGGTAGGTCGCCTTCTTCCGGAAGATCACTTTCGTCAACAATTGAA
GGTTGTTCTTGAAGCACGACAAAAGAANGGAAGATCACTTTCGTCTACAA
TTGAAGGTTGTTCTTGAAGCACGACAAAAGAAGCACTTTGTAGTGGTTGT
TCTTTGAGTGGTTCAGTATCCTCTGTTGTAATTGTTTGTGTCCTGGTGAA
AGATTTGACTGTTGGTAGGTCACCTTCTTTCGGAAGATCACTTTTGTCAA
CAATTGAAGGTTGTTCTTGAAGCACGACAAAAGAAGCACTTTGTAGTGGT
TCTTCTTCCACTGGTTCAGTATCTTCTGTTGTAATTGTCTGTGTTCTGGT
GAAAGATTTGACTGTTGGTAGGTCACCTTCTTCCGGAAGATCACTTTCGT
CAACAGCTGAAGGTTGTTCTTGAAGCATAACGAATGAAGCACTTTGTAGT
GGTTGTTCTTCGACTGGTTCAGTATCTTCTGTTGTAATTGTTTGTGTTCT
GGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTTTCGGAAGATCACTTT
CGTCAACAGCTAAAGATTGTTCTTGGAGCATAACGAATGAAGCACTTTGT
AGTGGTTGTTCTTCGGCTGGTTCAGTATCTTCTGTTGTAATCGTTTGTGT
CCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTTCCGGAAGATCAC
TTTCGTCTACAATTGAAGGTTGTTCTTGAAGCATAACGAATGAAGC
Run BLAST on NCBI

transcript from alignment at sc0006241:1..2205-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044804 ID=TCONS_00044804|Name=TCONS_00044804|organism=Clytia hemisphaerica|type=transcript|length=2205bp|location=Sequence derived from alignment at sc0006241:1..2205- (Clytia hemisphaerica)
AATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTT
CTGGAAGATCACTTTCGTCTACAATTGAAGGTTGTTCTTGATGCATAACG
AATGAAGCACTTTGTAGTGGTTGTTCTTCGACTGGTTCAGTATCTTCTGT
TGTAATTGTTTGTGTCCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTT
CTTCAGGAAAATCACTTTCGTCAACAATTGAAGGTTGTTCTTGAAGCATA
ACGAATGAAGCACTTTGTAGTGGTTGTTCTTCGGCTGGTTCAGTATCTTC
CGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTGGTNAGTATC
TTCCGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTGGTAGGT
CACCTTCTTCTGGAAGATCACTTTCGTCTACAATTGAAGGTTGTTCTTGA
AGCATAACGAATGAAGCACTTTGTAGTGGTTGTTCTTCGACTGGTTCAGT
ATCTTCTGTTATAATTGTCTGTGTTCTGGTGAAAGATTTGACTGTTGGTA
GGTCACCTTCTTCAGGAAAATCACTTTCGTCAACAATTGAAGGTTGTTCT
TGAAGCATAACGAATGAAGCACTTTGTAGTGGTTGTTCTTCGGCTGGTTC
AATATCTTCTGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGACTGTTG
GTAGGTCACCTTCTTTCGGAAGATCACTTTCGTCAACAGCTAAAGATTGT
TCTTGAAGCATAACGAATGAAGCACTTTGTAGTGGTTGTTCTTTGACTGG
TTTAGTATCTTCCGTTGTAATTGTTTGTGTTCTGGTGAAAGATTTGGCTG
TTGGTAGGTCACCTTCTTCCGGAAGATCACTTTCGTCTACAATTGAAGGT
TGTTCTTGAAGCACGACAAAAGAAACACTTTGTAGTGGTTGTTCTTTGAG
TGGTTCAGTATCCTCTGTTGTAATTGTTTGTGTCCTGGTGAAAGATTTGG
CTGTTGGTAGGTCGCCTTCTTCCGGAAGATCACTTTCGTCAACAATTGAA
GGTTGTTCTTGAAGCACGACAAAAGAANGGAAGATCACTTTCGTCTACAA
TTGAAGGTTGTTCTTGAAGCACGACAAAAGAAGCACTTTGTAGTGGTTGT
TCTTTGAGTGGTTCAGTATCCTCTGTTGTAATTGTTTGTGTCCTGGTGAA
AGATTTGACTGTTGGTAGGTCACCTTCTTTCGGAAGATCACTTTTGTCAA
CAATTGAAGGTTGTTCTTGAAGCACGACAAAAGAAGCACTTTGTAGTGGT
TCTTCTTCCACTGGTTCAGTATCTTCTGTTGTAATTGTCTGTGTTCTGGT
GAAAGATTTGACTGTTGGTAGGTCACCTTCTTCCGGAAGATCACTTTCGT
CAACAGCTGAAGGTTGTTCTTGAAGCACGACAAAGGAAGCACTTTGTAGT
GGTTGTTCTTCGGCTGGTTCAGTATCTTCTGTTATAATTGTCTGTGTTCT
GGTGAAAGATTTGGCTGTTGGTAGGTCGCCTTCTTCCGGAAGATCACTTT
CGTCAACAATTGAAGGTTGTTCTTGAAGCGCGACAAAAGAAGCACTTTGT
AGTGGTTGTTCTTTGAGTGGTTCAGTATCCTTTGTTGTAATTGTTTGTGT
CCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTTCAGGAAGATCAC
TTTCGTCTACAATTGAAGGTTGTTCTTGAAGCATAACGAATGAAGCACTT
TGTAGTGGTTGTTCTTCCACTGGTTCAGTATCTTCTGTTGTAATCATTTG
TGTTCTGGTGAAAGATTTGACTGTTGGAAGGTCGCCTTCTTCCGGAAGAT
CACTTTCGTCTACAATTGAAGGTTGTTCTTGAAGCATAACGAATGAAGCA
CTTTGTAGTGGTTGTTCTTCGACTGGTTCAGTATCTTCTGTTGTAATTGT
TTGTGTTCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTTTCGGAA
GATCACTTTCGTCAACAGCTAAAGATTGTTCTTGGAGCATAACGAATGAA
GCACTTTGTAGTGGTTGTTCTTCGGCTGGTTCAGTATCTTCTGTTGTAAT
CGTTTGTGTCCTGGTGAAAGATTTGACTGTTGGTAGGTCACCTTCTTCCG
GAAGATCACTTTCGTCTACAATTGAAGGTTGTTCTTGAAGCATAACGAAT
GAAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028413XLOC_028413Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044804-exon-sc0006241-1575043694:794..2205TCONS_00044804-exon-sc0006241-1575043694:794..2205Clytia hemisphaericaexon
TCONS_00044804-exon-sc0006241-1575043694:1..334TCONS_00044804-exon-sc0006241-1575043694:1..334Clytia hemisphaericaexon
TCONS_00044804-exon-sc0006241-1510915933:794..2205TCONS_00044804-exon-sc0006241-1510915933:794..2205Clytia hemisphaericaexon
TCONS_00044804-exon-sc0006241-1510915933:1..334TCONS_00044804-exon-sc0006241-1510915933:1..334Clytia hemisphaericaexon
TCONS_00044804-exon-sc0006241-1491911889:794..2205TCONS_00044804-exon-sc0006241-1491911889:794..2205Clytia hemisphaericaexon
TCONS_00044804-exon-sc0006241-1491911889:1..334TCONS_00044804-exon-sc0006241-1491911889:1..334Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006241supercontigsc0006241:1..2205 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0887872	0.120404	0.16407	0	3.34762	1.19461	0.309498	0.51803	0.0764204	0.490822	0.378927	0.332605	5.75311	5.70459	0.142995	0.142253	0.964555	1.17247	10.7414	20.9615	1.6391	1.02756	0.312641	0.769898	7.96366	6.85564	0.379345	0.129185	0.175464	0.164895
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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