TCONS_00044806 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044806
Unique NameTCONS_00044806
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length292

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044806 ID=TCONS_00044806|Name=TCONS_00044806|organism=Clytia hemisphaerica|type=transcript|length=292bp
TTCCCTGCATTGCGAATTAGCCAAACTATGCCTTAGTAAAAGTAAGTTTA
AAAACAAAGACGTTTGTCTCTAGAGTAAATTTACGAtgtaaataaaatat
caaaaatacaagctacaaaacattttaaaaattaagTTTTGTTCAATAAA
AGACGAAAGAAATATGCAAATAAAAACTGGTACAAAGTTTTAAATAGAAT
GTTTGCATGTATGTATACATAAATGTATCAacgtaaaatatcaaaaataa
gcTAACAAGTAAAGTACTTCAAAatgtatattatattatata
Run BLAST on NCBI

transcript from alignment at sc0006244:359..650

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044806 ID=TCONS_00044806|Name=TCONS_00044806|organism=Clytia hemisphaerica|type=transcript|length=292bp|location=Sequence derived from alignment at sc0006244:359..650 (Clytia hemisphaerica)
tatataatataatatacatTTTGAAGTACTTTACTTGTTAgcttattttt
gatattttacgtTGATACATTTATGTATACATACATGCAAACATTCTATT
TAAAACTTTGTACCAGTTTTTATTTGCATATTTCTTTCGTCTTTTATTGA
ACAAAActtaatttttaaaatgttttgtagcttgtatttttgatatttta
tttacaTCGTAAATTTACTCTAGAGACAAACGTCTTTGTTTTTAAACTTA
CTTTTACTAAGGCATAGTTTGGCTAATTCGCAATGCAGGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028415XLOC_028415Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044806-exon-sc0006244-1491911889:359..650TCONS_00044806-exon-sc0006244-1491911889:359..650Clytia hemisphaericaexon
TCONS_00044806-exon-sc0006244-1510915933:359..650TCONS_00044806-exon-sc0006244-1510915933:359..650Clytia hemisphaericaexon
TCONS_00044806-exon-sc0006244-1575043694:359..650TCONS_00044806-exon-sc0006244-1575043694:359..650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006244supercontigsc0006244:359..650 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.415455	0	0	7.46898	2.27003	3.83418	3.07672	1.07704	1.33409	0	1.13496	0.56669	0.588513	0.967675	0.259616	0.639651	1.31124	1.81155	2.36958	1.23575	1.80827	1.95395	1.33232	0	0.408235	1.75255	0	0.945739	0.481779
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044806 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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