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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044807 ID=TCONS_00044807|Name=TCONS_00044807|organism=Clytia hemisphaerica|type=transcript|length=787bp
tttaggtatgagaagaaaaagaaagatttggaaagaCTAAGgaaCATCCA
AAACGGCAAGAAGAAACAGATTCCTGATCTTGATGAATTAATTTTACCTG
ATGTGCCCGATGACAACCATACCTCCCCTAATAATCAACAACCAAACAAT
AAAGATAGCTCTGTGAACAATGAGAACCATTCTCCCAGAGAGATACAACC
AAAACCGAAGCAACCATCAAAAGATCTTATTAGCGTCACAGAACTCTACG
AACTATTTAAAAGTCATAAAGAGGAATTGAACACCATATTAATAATGGAT
ATAAGAGAGACAATAGATTTCAACACAGCAAAGATTCAACATGGACCCAC
CATTAATATTCCACCAGATTTGTTGCAAACCAACTCAACACAAAATAGTG
TTGAGCGATATTTAAGTAAAGACACTTGGGAAGTGTGGATAACTCGGTTT
GAAAAGCAATATATAATTATTGTTAATGAAACTTTTAACGAGGAGCAGGA
ACCTGGAGAGCTTTTGATGGACAAATCAGTGATTTTACAAGAGATACTAT
GCAAAGCAGAAGCTGAGTATAAAGTGATGATCTTGAAAGGGGGCATTCAA
AAATGGGTTCTTCATTACCCAACGATGACTATCAACCCTGAACACATTAG
Aaaggtaataataataataccgggtgacccacgaaaaagtataagagttt
ggagggtaactgtgtccgaaaaaaattgaatttcaactAAATTCTCTTTT
Cgtggtaaagaggaaaggcaaacttaaattttgatgt Run BLAST on NCBI protein sequence of TCONS_00044807-protein >TCONS_00044807-protein ID=TCONS_00044807-protein|Name=TCONS_00044807-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
FRYEKKKKDLERLRNIQNGKKKQIPDLDELILPDVPDDNHTSPNNQQPNN
KDSSVNNENHSPREIQPKPKQPSKDLISVTELYELFKSHKEELNTILIMD
IRETIDFNTAKIQHGPTINIPPDLLQTNSTQNSVERYLSKDTWEVWITRF
EKQYIIIVNETFNEEQEPGELLMDKSVILQEILCKAEAEYKVMILKGGIQ
KWVLHYPTMTINPEHIRKVIIIIPGDPRKSIRVWRVTVSEKN Run BLAST on NCBI transcript from alignment at sc0006246:547..1787+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044807 ID=TCONS_00044807|Name=TCONS_00044807|organism=Clytia hemisphaerica|type=transcript|length=1241bp|location=Sequence derived from alignment at sc0006246:547..1787+ (Clytia hemisphaerica)
tttaggtatgagaagaaaaagaaagatttggaaagaCTAAGGTACCTTTT
TAATACTCAACATCATGATTTTTAGATCTATTATTAAGGTTAGTTACTAT
TTCTAATGAAAACGTTTCAAAGGTTTAATTTAGTTGTTCTAATTATGTTC
TTCTTTCTGTATGTATGACTTTCAAAATGATGACTTTTaatcgtattact
tcgaataaacttAGAAAGTCTCCTTCTTTTAAACAACCTCCTccaataaa
cgcccctcctccaataaacgcccctcctaaaatccaaaaagttttATGAA
CACCCGGGgcatttattcgaagtaatacgataTCTTAGTTtacacaaaat
attttgaaatttcaggaaCATCCAAAACGGCAAGAAGAAACAGGTCAGTC
ATGTCTTTCTTTTTCACTATATTGTTTATTATTTAACAAATTTATCAGTG
AAGAAAAAGGTATAAACTAGTATAAACTATGGCAAAAGTTATTGAATGTT
GTTTTTCCTTGTCAACATTTCAGATTCCTGATCTTGATGAATTAATTTTA
CCTGATGTGCCCGATGACAACCATACCTCCCCTAATAATCAACAACCAAA
CAATAAAGATAGCTCTGTGAACAATGAGAACCATTCTCCCAGAGAGATAC
AACCAAAACCGAAGCAACCATCAAAAGATCTTATTAGCGTCACAGAACTC
TACGAACTATTTAAAAGTCATAAAGAGGAATTGAACACCATATTAATAAT
GGATATAAGAGAGACAATAGATTTCAACACAGCAAAGATTCAACATGGAC
CCACCATTAATATTCCACCAGATTTGTTGCAAACCAACTCAACACAAAAT
AGTGTTGAGCGATATTTAAGTAAAGACACTTGGGAAGTGTGGATAACTCG
GTTTGAAAAGCAATATATAATTATTGTTAATGAAACTTTTAACGAGGAGC
AGGAACCTGGAGAGCTTTTGATGGACAAATCAGTGATTTTACAAGAGATA
CTATGCAAAGCAGAAGCTGAGTATAAAGTGATGATCTTGAAAGGGGGCAT
TCAAAAATGGGTTCTTCATTACCCAACGATGACTATCAACCCTGAACACA
TTAGAaaggtaataataataataccgggtgacccacgaaaaagtataaga
gtttggagggtaactgtgtccgaaaaaaattgaatttcaactAAATTCTC
TTTTCgtggtaaagaggaaaggcaaacttaaattttgatgt Coding sequence (CDS) from alignment at sc0006246:547..1787+ >TCONS_00044807 ID=TCONS_00044807|Name=TCONS_00044807|organism=Clytia hemisphaerica|type=CDS|length=2187bp|location=Sequence derived from alignment at sc0006246:547..1787+ (Clytia hemisphaerica)
tttaggtatgagaagaaaaagaaagatttggaaagaCTAAGgaaCATCCA
AAACGGCAAGAAGAAACAGATTCCTGATCTTGATGAATTAATTTTACCTG
ATGTGCCCGATGACAACCATACCTCCCCTAATAATCAACAACCAAACAAT
AAAGATAGCTCTGTGAACAATGAGAACCATTCTCCCAGAGAGATACAACC
AAAACCGAAGCAACCATCAAAAGATCTTATTAGCGTCACAGAACTCTACG
AACTATTTAAAAGTCATAAAGAGGAATTGAACACCATATTAATAATGGAT
ATAAGAGAGACAATAGATTTCAACACAGCAAAGATTCAACATGGACCCAC
CATTAATATTCCACCAGATTTGTTGCAAACCAACTCAACACAAAATAGTG
TTGAGCGATATTTAAGTAAAGACACTTGGGAAGTGTGGATAACTCGGTTT
GAAAAGCAATATATAATTATTGTTAATGAAACTTTTAACGAGGAGCAGGA
ACCTGGAGAGCTTTTGATGGACAAATCAGTGATTTTACAAGAGATACTAT
GCAAAGCAGAAGCTGAGTATAAAGTGATGATCTTGAAAGGGGGCATTCAA
AAATGGGTTCTTCATTACCCAACGATGACTATCAACCCTGAACACATTAG
Aaaggtaataataataataccgggtgacccacgaaaaagtataagagttt
ggagggtaactgtgtccgaaaaaaattgatttaggtatgagaagaaaaag
aaagatttggaaagaCTAAGgaaCATCCAAAACGGCAAGAAGAAACAGAT
TCCTGATCTTGATGAATTAATTTTACCTGATGTGCCCGATGACAACCATA
CCTCCCCTAATAATCAACAACCAAACAATAAAGATAGCTCTGTGAACAAT
GAGAACCATTCTCCCAGAGAGATACAACCAAAACCGAAGCAACCATCAAA
AGATCTTATTAGCGTCACAGAACTCTACGAACTATTTAAAAGTCATAAAG
AGGAATTGAACACCATATTAATAATGGATATAAGAGAGACAATAGATTTC
AACACAGCAAAGATTCAACATGGACCCACCATTAATATTCCACCAGATTT
GTTGCAAACCAACTCAACACAAAATAGTGTTGAGCGATATTTAAGTAAAG
ACACTTGGGAAGTGTGGATAACTCGGTTTGAAAAGCAATATATAATTATT
GTTAATGAAACTTTTAACGAGGAGCAGGAACCTGGAGAGCTTTTGATGGA
CAAATCAGTGATTTTACAAGAGATACTATGCAAAGCAGAAGCTGAGTATA
AAGTGATGATCTTGAAAGGGGGCATTCAAAAATGGGTTCTTCATTACCCA
ACGATGACTATCAACCCTGAACACATTAGAaaggtaataataataatacc
gggtgacccacgaaaaagtataagagtttggagggtaactgtgtccgaaa
aaaattgatttaggtatgagaagaaaaagaaagatttggaaagaCTAAGg
aaCATCCAAAACGGCAAGAAGAAACAGATTCCTGATCTTGATGAATTAAT
TTTACCTGATGTGCCCGATGACAACCATACCTCCCCTAATAATCAACAAC
CAAACAATAAAGATAGCTCTGTGAACAATGAGAACCATTCTCCCAGAGAG
ATACAACCAAAACCGAAGCAACCATCAAAAGATCTTATTAGCGTCACAGA
ACTCTACGAACTATTTAAAAGTCATAAAGAGGAATTGAACACCATATTAA
TAATGGATATAAGAGAGACAATAGATTTCAACACAGCAAAGATTCAACAT
GGACCCACCATTAATATTCCACCAGATTTGTTGCAAACCAACTCAACACA
AAATAGTGTTGAGCGATATTTAAGTAAAGACACTTGGGAAGTGTGGATAA
CTCGGTTTGAAAAGCAATATATAATTATTGTTAATGAAACTTTTAACGAG
GAGCAGGAACCTGGAGAGCTTTTGATGGACAAATCAGTGATTTTACAAGA
GATACTATGCAAAGCAGAAGCTGAGTATAAAGTGATGATCTTGAAAGGGG
GCATTCAAAAATGGGTTCTTCATTACCCAACGATGACTATCAACCCTGAA
CACATTAGAaaggtaataataataataccgggtgacccacgaaaaagtat
aagagtttggagggtaactgtgtccgaaaaaaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044807-exon-sc0006246-1491911889:547..587 | TCONS_00044807-exon-sc0006246-1491911889:547..587 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1510915933:547..587 | TCONS_00044807-exon-sc0006246-1510915933:547..587 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1575043694:547..587 | TCONS_00044807-exon-sc0006246-1575043694:547..587 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1491911889:912..939 | TCONS_00044807-exon-sc0006246-1491911889:912..939 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1510915933:912..939 | TCONS_00044807-exon-sc0006246-1510915933:912..939 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1575043694:912..939 | TCONS_00044807-exon-sc0006246-1575043694:912..939 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1491911889:1070..1787 | TCONS_00044807-exon-sc0006246-1491911889:1070..1787 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1510915933:1070..1787 | TCONS_00044807-exon-sc0006246-1510915933:1070..1787 | Clytia hemisphaerica | exon |
| TCONS_00044807-exon-sc0006246-1575043694:1070..1787 | TCONS_00044807-exon-sc0006246-1575043694:1070..1787 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006246 | supercontig | sc0006246:547..1787 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001763 | Rhodanese-like_dom |
Blast
The following BLAST results are available for this feature:
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