TCONS_00044809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044809
Unique NameTCONS_00044809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length271

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044809 ID=TCONS_00044809|Name=TCONS_00044809|organism=Clytia hemisphaerica|type=transcript|length=271bp
gccgattccccggACAATACGGGGCAAATGTCCGgggatcaaaacaaaca
tttttacccccggacacaTGTCTGGGGAACCATTACGCGCGAGAAAAGTT
TCCCCGGACATTATTTTCCGAGACTTTATAAAGTGTCCGGGGTATATTTC
GAAACAAACCGCGCGGCCAAATAAGTGGATCGCGCGGTTATTACGCGGCC
AGATAATTGGTCCTGCGGCCAGGTAAGTGGACCGTGCGGTTTGATAAGTG
AACCGCGCGGCCGAATAAGTG
Run BLAST on NCBI

transcript from alignment at sc0006249:1902..2172

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044809 ID=TCONS_00044809|Name=TCONS_00044809|organism=Clytia hemisphaerica|type=transcript|length=271bp|location=Sequence derived from alignment at sc0006249:1902..2172 (Clytia hemisphaerica)
CACTTATTCGGCCGCGCGGTTCACTTATCAAACCGCACGGTCCACTTACC
TGGCCGCAGGACCAATTATCTGGCCGCGTAATAACCGCGCGATCCACTTA
TTTGGCCGCGCGGTTTGTTTCGAAATATACCCCGGACACTTTATAAAGTC
TCGGAAAATAATGTCCGGGGAAACTTTTCTCGCGCGTAATGGTTCCCCAG
ACAtgtgtccgggggtaaaaatgtttgttttgatcccCGGACATTTGCCC
CGTATTGTccggggaatcggc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028418XLOC_028418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044809-exon-sc0006249-1491911889:1902..2172TCONS_00044809-exon-sc0006249-1491911889:1902..2172Clytia hemisphaericaexon
TCONS_00044809-exon-sc0006249-1510915933:1902..2172TCONS_00044809-exon-sc0006249-1510915933:1902..2172Clytia hemisphaericaexon
TCONS_00044809-exon-sc0006249-1575043694:1902..2172TCONS_00044809-exon-sc0006249-1575043694:1902..2172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006249supercontigsc0006249:1902..2172 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.544879	0	0	0	0	0	0.672533	0.941713	2.33293	0	2.23279	0.743228	3.47332	2.53826	0.680985	0.419459	0.429932	0.593974	1.2431	1.62072	0.790532	0	0	0	1.07082	1.53234	0.817679	0	0.631866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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