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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044829 ID=TCONS_00044829|Name=TCONS_00044829|organism=Clytia hemisphaerica|type=transcript|length=1080bp
ttacaATGTCATTGAAAACATGCCTGGCACCGTGAAATGGATTTTTAATG
TCGTCTATTTCATTAAGTTTTTGGGAATGTCAGCTTCTGGTGGAATTTTG
TTGATGATGGCCTACGATCGATATTCCAAAATCACCAGACCTTTGCAGAT
AGATGAGAACCCAAAAAGGAAAGTCAATCTGATGACTGCAGCTTTTTACA
TGTTGGCCATCTTTGGGATTCTTCCAACAGACTTGTTTATCAAAGACCGG
AATCTGGAAACTGTTGTGAATTTGATAACATACAGCATTGGTGTTCTCAG
CTTGGTGGTGGCTCCTATCTTTGGTAACGTGTGGTTCTACTTGAaggtga
aaaaatatttgagaattACAGCAGCTGAGGGTAATATGAATGTCACACAA
CAACAGCACCGACAACGATTGAGAAATGAAGTGGCCGTCCAAACTTTGAG
ATGGTTAACCATTTTTATGTTGATCTGTGTTGCTGGTccgaaaattttca
tttctgtTGTTTGGGGCACTCTTGTTGCCGAAACGAAGTCTGTCCGAAAT
GGTCTAACAATGGACAGCTTAGCCATTAAAGTACTTACNTTTCATTTCTG
TTGTCTGGGCCACTCTTGTTGTCGAAAAGAAGTCTGTCCGAAATGGTCTA
ACAATGGACAGCTTAACCATTAAAGTACTTATCCTTATCTCCAACAATTT
GATATATATCAACAATGCTGTCAACGTGTTCGTTTATTATAAATTTATCC
GGGAATTCAGAACTTGGATCAAAAGGCTGTTTGGTTTTCATCGACGTAGA
GCCAATTCTGCTGAACAGCGAGAGAGCCGGTtgtaaaaaaactgattttc
aagTTAGCTTGGACAGAACAATACCCTCTGTTTATTGCCTCTTAAATTTG
AGGGGGTGATAGGAAGAGGGTGGTACGGTATACTAAGGAGTACGAAATTG
ATCAGATGAATAATTTTTACTTTGCCTAACAAAACTCATAATTTATCTGC
TAAAatgtaataaatatttttctgattttttttattttctttcatcGTTA
ATCTATATACAAATATATTGTAGAAATTTC Run BLAST on NCBI protein sequence of TCONS_00044829-protein >TCONS_00044829-protein ID=TCONS_00044829-protein|Name=TCONS_00044829-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
YNVIENMPGTVKWIFNVVYFIKFLGMSASGGILLMMAYDRYSKITRPLQI
DENPKRKVNLMTAAFYMLAIFGILPTDLFIKDRNLETVVNLITYSIGVLS
LVVAPIFGNVWFYLKVKKYLRITAAEGNMNVTQQQHRQRLRNEVAVQTLR
WLTIFMLICVAGPKIFISVVWGTLVAETKSVRNGLTMDSLAIKVLXFHFC
CLGHSCCRKEVCPKWSNNGQLNH Run BLAST on NCBI transcript from alignment at sc0006287:951..2030 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044829 ID=TCONS_00044829|Name=TCONS_00044829|organism=Clytia hemisphaerica|type=transcript|length=1080bp|location=Sequence derived from alignment at sc0006287:951..2030 (Clytia hemisphaerica)
GAAATTTCTACAATATATTTGTATATAGATTAACgatgaaagaaaataaa
aaaaatcagaaaaatatttattacatTTTAGCAGATAAATTATGAGTTTT
GTTAGGCAAAGTAAAAATTATTCATCTGATCAATTTCGTACTCCTTAGTA
TACCGTACCACCCTCTTCCTATCACCCCCTCAAATTTAAGAGGCAATAAA
CAGAGGGTATTGTTCTGTCCAAGCTAActtgaaaatcagtttttttacaA
CCGGCTCTCTCGCTGTTCAGCAGAATTGGCTCTACGTCGATGAAAACCAA
ACAGCCTTTTGATCCAAGTTCTGAATTCCCGGATAAATTTATAATAAACG
AACACGTTGACAGCATTGTTGATATATATCAAATTGTTGGAGATAAGGAT
AAGTACTTTAATGGTTAAGCTGTCCATTGTTAGACCATTTCGGACAGACT
TCTTTTCGACAACAAGAGTGGCCCAGACAACAGAAATGAAANGTAAGTAC
TTTAATGGCTAAGCTGTCCATTGTTAGACCATTTCGGACAGACTTCGTTT
CGGCAACAAGAGTGCCCCAAACAacagaaatgaaaattttcggACCAGCA
ACACAGATCAACATAAAAATGGTTAACCATCTCAAAGTTTGGACGGCCAC
TTCATTTCTCAATCGTTGTCGGTGCTGTTGTTGTGTGACATTCATATTAC
CCTCAGCTGCTGTaattctcaaatattttttcacctTCAAGTAGAACCAC
ACGTTACCAAAGATAGGAGCCACCACCAAGCTGAGAACACCAATGCTGTA
TGTTATCAAATTCACAACAGTTTCCAGATTCCGGTCTTTGATAAACAAGT
CTGTTGGAAGAATCCCAAAGATGGCCAACATGTAAAAAGCTGCAGTCATC
AGATTGACTTTCCTTTTTGGGTTCTCATCTATCTGCAAAGGTCTGGTGAT
TTTGGAATATCGATCGTAGGCCATCATCAACAAAATTCCACCAGAAGCTG
ACATTCCCAAAAACTTAATGAAATAGACGACATTAAAAATCCATTTCACG
GTGCCAGGCATGTTTTCAATGACATtgtaa Coding sequence (CDS) from alignment at sc0006287:951..2030 >TCONS_00044829 ID=TCONS_00044829|Name=TCONS_00044829|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0006287:951..2030 (Clytia hemisphaerica)
TTAATGGTTAAGCTGTCCATTGTTAGACCATTTCGGACAGACTTCTTTTC
GACAACAAGAGTGGCCCAGACAACAGAAATGAAANGTAAGTACTTTAATG
GCTAAGCTGTCCATTGTTAGACCATTTCGGACAGACTTCGTTTCGGCAAC
AAGAGTGCCCCAAACAacagaaatgaaaattttcggACCAGCAACACAGA
TCAACATAAAAATGGTTAACCATCTCAAAGTTTGGACGGCCACTTCATTT
CTCAATCGTTGTCGGTGCTGTTGTTGTGTGACATTCATATTACCCTCAGC
TGCTGTaattctcaaatattttttcacctTCAAGTAGAACCACACGTTAC
CAAAGATAGGAGCCACCACCAAGCTGAGAACACCAATGCTGTATGTTATC
AAATTCACAACAGTTTCCAGATTCCGGTCTTTGATAAACAAGTCTGTTGG
AAGAATCCCAAAGATGGCCAACATGTAAAAAGCTGCAGTCATCAGATTGA
CTTTCCTTTTTGGGTTCTCATCTATCTGCAAAGGTCTGGTGATTTTGGAA
TATCGATCGTAGGCCATCATCAACAAAATTCCACCAGAAGCTGACATTCC
CAAAAACTTAATGAAATAGACGACATTAAAAATCCATTTCACGGTGCCAG
GCATGTTTTCAATGACATtgta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044829-exon-sc0006287-1491911889:951..2030 | TCONS_00044829-exon-sc0006287-1491911889:951..2030 | Clytia hemisphaerica | exon |
| TCONS_00044829-exon-sc0006287-1510915933:951..2030 | TCONS_00044829-exon-sc0006287-1510915933:951..2030 | Clytia hemisphaerica | exon |
| TCONS_00044829-exon-sc0006287-1575043694:951..2030 | TCONS_00044829-exon-sc0006287-1575043694:951..2030 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006287 | supercontig | sc0006287:951..2030 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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