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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044839 ID=TCONS_00044839|Name=TCONS_00044839|organism=Clytia hemisphaerica|type=transcript|length=476bp
TTACAAAGCTTCGTAGATCGTTACGTTGGAAGCTACCAAAAAGACCAGCC
CTTATCCAAACACGTCATTAATGCGGTGCAGTTACGGAAACAAGAAGTTT
ATCTTATCTTAAACGAACTATCAGAAGACGAATGCCGTGAGAAAATCATC
GAAGGCAAACAAGATGCGGTCTGTTTCTTATATGACGTCACCGACCCTGC
TTCTTTTCAATTTGTCGCTGATCTCCAAACAGAATTGAAAAAATCTCCAT
CAATCTTTGTTGGAACAAAATCAGACATGTCCAGTGCAAAACAGGTAATT
TTATAACACGTTCACAACCAAGCCTTTttaagaaatcgaaaatgtGACCT
GTTAGAATTTTACCGAAAGTTCGACTTTCCGAGGCTTCTCTGCACTGAGT
TTAGCTTCATATACCTTTAAATTTCATACCAATCCACGCAGAATTTCTCG
TAGATTCTAGAAAtgcaataaaagca Run BLAST on NCBI protein sequence of TCONS_00044839-protein >TCONS_00044839-protein ID=TCONS_00044839-protein|Name=TCONS_00044839-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
LQSFVDRYVGSYQKDQPLSKHVINAVQLRKQEVYLILNELSEDECREKII
EGKQDAVCFLYDVTDPASFQFVADLQTELKKSPSIFVGTKSDMSSAKQVI
L Run BLAST on NCBI transcript from alignment at sc0006296:1..2021+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044839 ID=TCONS_00044839|Name=TCONS_00044839|organism=Clytia hemisphaerica|type=transcript|length=2021bp|location=Sequence derived from alignment at sc0006296:1..2021+ (Clytia hemisphaerica)
TTACAAAGCTTCGTAGATCGTTACGTTGGAAGCTACCAAAAAGACCAGCC
CTTATCCAAACACGTCATTAATGCGGTGCAGTTACGGAAACAAGAAGTTT
ATCTTATCGTGAGTTGGccggtttttttattttacgactTGTTTTGATGC
ACGGGCTTTCTATTTGCAACTTACGTTGACGTTTTATGCAGTAGCGTGGT
CGGTCGGTTAAAATTGgggcaaactggggaggcaatgTAAGAAGATTTTG
ATCTTGGCGCCCCCCTATGAAAAGTAAAATATCGTTATAAAgattatgcg
agcgaagcgtGCACGAtaattttggggtattttctcTCTCGGCCATATAT
AAGGTCTAAAAGAGCAGTGGGGCGCCAAAATTAGTAGTCGGAGGCATCTT
TTTGCGCTCTTTGTATTTTGGCCCCCcccccaccacgctactggttCTAT
GGTACACAAAATTGAAGCCTCGCATCTTTCTTGGGAACTGAACCTTTTTT
GCGtgctgtttatttttgttttgatttttgaaaaagtttattaTACTCTC
GATCTCTAATTgttatcaaatttcaaattatgtgGCTTGAAAGCTTGTAG
CCTGAGAGTAGAGAACTAATTTTAGAAGcattggaaagctatttttataC
TCTTTAAAGAAACTTAGTTTATGCCCCTCTAAATGAGGGGGTGAAGAGCT
ATATCTAAAAGTGTTTTGACCGATTTTTGACGTCGTTAGAAGTTTTTTCT
ATTCTATTCACTGATCTCTAACTACTTGGCTGGATCGGGTTTCCCATATA
AAAAGAAGCGCGTCCAGTTTCAGAGCTAACTCATCCGCCAGTTTGTTTTC
AATGTTGGTCGTCCACGGCACAATTCGAATGTTtagaaattcgaacgttc
gaaaatcaaaggtaaaatagaaaacaacatGGCGGACTATATCGACTTCA
AAACTGGACAGAGTTCCGCGGGAAATCTGTGAGCAGTTAGCCTATCTAat
gtgtaaaagaatatgatatTTATGATTCTATTtaaatttcttctattttt
tatctttttattttcttcatgcAGTTAAACGAACTATCAGAAGACGAATG
CCGTGAGAAAATCATCGAAGGCAAACAAGATGCGGTCTGTTTCTTATATG
ACGTCACCGACCCTGCTTCTTTTCAATTTGTCGCTGATCTCCAAACAGTA
AGATCATTTCGGAGGATGAAgatgacaatttttttgaaatttaaaactcC
GAAAGTGTTTGACTTCTTAAACTGCACAATAATTTCATTGCATCAATTTT
ACTTAGCCAGGATCTAGACTCTGGTTTTCTGCTTTACTGATGGAGAAAAG
GAGAGACCCAGCTCAAAACTCACACGTCCAAATCTCATAACGTTATAAGT
GATAGAAATGAATATTTTGTTGAGAAAATGTTACGGATTTTCATCGCTAG
CTTTTCTATAACTTTATTGTCTCTGACTctcccgaaaaaaaattgaatat
gaggGGGTGGAGGGTGTAACATGTTTTTTGGCAATTTACCTCCCCCATAT
CATTGTGATTTTTGGCCCCAGGTAGCAGGTAGCAGGTCCCACTGAACATG
CATCAGCCgacccccggacattcaaaattacccccctcccctcaaacaga
gcaagtttaccccaggacaaggcaaattttgtagatttttcattaCTACC
CGGAcaattatatcctccacccttcatgttgtacgaacattttctgggaG
AGTCCCTTTCTTCCTTTCTTCTTCAGGAATTGAAAAAATCTCCATCAATC
TTTGTTGGAACAAAATCAGACATGTCCAGTGCAAAACAGGTAATTTTATA
ACACGTTCACAACCAAGCCTTTttaagaaatcgaaaatgtGACCTGTTAG
AATTTTACCGAAAGTTCGACTTTCCGAGGCTTCTCTGCACTGAGTTTAGC
TTCATATACCTTTAAATTTCATACCAATCCACGCAGAATTTCTCGTAGAT
TCTAGAAAtgcaataaaagca Coding sequence (CDS) from alignment at sc0006296:1..2021+ >TCONS_00044839 ID=TCONS_00044839|Name=TCONS_00044839|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0006296:1..2021+ (Clytia hemisphaerica)
TTACAAAGCTTCGTAGATCGTTACGTTGGAAGCTACCAAAAAGACCAGCC
CTTATCCAAACACGTCATTAATGCGGTGCAGTTACGGAAACAAGAAGTTT
ATCTTATCTTAAACGAACTATCAGAAGACGAATGCCGTGAGAAAATCATC
GAAGGCAAACAAGATGCGGTCTGTTTCTTATATGACGTCACCGACCCTGC
TTCTTTTCAATTTGTCGCTGATCTCCAAACAGAATTGAAAAAATCTCCAT
CAATCTTTGTTGGAACAAAATCAGACATGTCCAGTGCAAAACAGGTAATT
TTATAATTACAAAGCTTCGTAGATCGTTACGTTGGAAGCTACCAAAAAGA
CCAGCCCTTATCCAAACACGTCATTAATGCGGTGCAGTTACGGAAACAAG
AAGTTTATCTTATCTTAAACGAACTATCAGAAGACGAATGCCGTGAGAAA
ATCATCGAAGGCAAACAAGATGCGGTCTGTTTCTTATATGACGTCACCGA
CCCTGCTTCTTTTCAATTTGTCGCTGATCTCCAAACAGAATTGAAAAAAT
CTCCATCAATCTTTGTTGGAACAAAATCAGACATGTCCAGTGCAAAACAG
GTAATTTTATAATTACAAAGCTTCGTAGATCGTTACGTTGGAAGCTACCA
AAAAGACCAGCCCTTATCCAAACACGTCATTAATGCGGTGCAGTTACGGA
AACAAGAAGTTTATCTTATCTTAAACGAACTATCAGAAGACGAATGCCGT
GAGAAAATCATCGAAGGCAAACAAGATGCGGTCTGTTTCTTATATGACGT
CACCGACCCTGCTTCTTTTCAATTTGTCGCTGATCTCCAAACAGAATTGA
AAAAATCTCCATCAATCTTTGTTGGAACAAAATCAGACATGTCCAGTGCA
AAACAGGTAATTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044839-exon-sc0006296-1491911889:1..108 | TCONS_00044839-exon-sc0006296-1491911889:1..108 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1510915933:1..108 | TCONS_00044839-exon-sc0006296-1510915933:1..108 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1575043694:1..108 | TCONS_00044839-exon-sc0006296-1575043694:1..108 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1491911889:1075..1197 | TCONS_00044839-exon-sc0006296-1491911889:1075..1197 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1510915933:1075..1197 | TCONS_00044839-exon-sc0006296-1510915933:1075..1197 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1575043694:1075..1197 | TCONS_00044839-exon-sc0006296-1575043694:1075..1197 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1491911889:1777..2021 | TCONS_00044839-exon-sc0006296-1491911889:1777..2021 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1510915933:1777..2021 | TCONS_00044839-exon-sc0006296-1510915933:1777..2021 | Clytia hemisphaerica | exon |
| TCONS_00044839-exon-sc0006296-1575043694:1777..2021 | TCONS_00044839-exon-sc0006296-1575043694:1777..2021 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006296 | supercontig | sc0006296:1..2021 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027417 | P-loop_NTPase |
Blast
The following BLAST results are available for this feature:
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