TCONS_00044848 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044848
Unique NameTCONS_00044848
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length355

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044848 ID=TCONS_00044848|Name=TCONS_00044848|organism=Clytia hemisphaerica|type=transcript|length=355bp
TTTGCGGTAAAGTTTGATTACTGTTCGATTATTTAtcgtaatcgaacagc
tatcgttcgattaagttcgattgagTTTGATGATTCGATTACGAAAATCG
GTTCGATAAAGTTCGGTTGACATTGCCTGGGCTTGATTACCTATCAATTA
TCGGAAtcaatcgatatctaatccatgaTGCATGGATTGGTTATCAATTG
GTCATcgattgaaaattatcgattgtATCGAGTATCGTGTGGGAGCcagt
tttcagagcatgtcatgGTTGCCCCAAGGAAAATTTCCACAACATAAAAC
TCTGCCCCTAAGATCTGTTTCCCACCacaaaaaaatccagaaaaacaggT
AAATT
Run BLAST on NCBI

transcript from alignment at sc0006314:1312..1666

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044848 ID=TCONS_00044848|Name=TCONS_00044848|organism=Clytia hemisphaerica|type=transcript|length=355bp|location=Sequence derived from alignment at sc0006314:1312..1666 (Clytia hemisphaerica)
AATTTAcctgtttttctggatttttttgtGGTGGGAAACAGATCTTAGGG
GCAGAGTTTTATGTTGTGGAAATTTTCCTTGGGGCAACcatgacatgctc
tgaaaactgGCTCCCACACGATACTCGATacaatcgataattttcaatcg
ATGACCAATTGATAACCAATCCATGCAtcatggattagatatcgattgaT
TCCGATAATTGATAGGTAATCAAGCCCAGGCAATGTCAACCGAACTTTAT
CGAACCGATTTTCGTAATCGAATCATCAAActcaatcgaacttaatcgaa
cgatagctgttcgattacgaTAAATAATCGAACAGTAATCAAACTTTACC
GCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028453XLOC_028453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044848-exon-sc0006314-1491911889:1312..1666TCONS_00044848-exon-sc0006314-1491911889:1312..1666Clytia hemisphaericaexon
TCONS_00044848-exon-sc0006314-1510915933:1312..1666TCONS_00044848-exon-sc0006314-1510915933:1312..1666Clytia hemisphaericaexon
TCONS_00044848-exon-sc0006314-1575043694:1312..1666TCONS_00044848-exon-sc0006314-1575043694:1312..1666Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006314supercontigsc0006314:1312..1666 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.236961	0.55027	1.34588	1.31079	0.776851	0	0.584953	0.614309	1.2682	0.24619	0.323671	0.323221	0	0.413947	0.444229	0.364835	0.322991	0	0	0	0	0	0.0564044	1.56538	0.931375	0	0.711197	0.269709	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044848 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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