TCONS_00044850 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044850
Unique NameTCONS_00044850
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1084

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044850 ID=TCONS_00044850|Name=TCONS_00044850|organism=Clytia hemisphaerica|type=transcript|length=1084bp
AGGTTGGGCGAACGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGCG
TTGGAGATACGAGCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGTA
TGGAGTGGTCCTTCCGTCGATGTCGCCATGGAGAATGATTATGGATTATC
TTGGCAGATTGGTGACGTATTAAGCGTGTTGTTGTCATGGAGTGGAGTGG
TGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAAAAATGTA
GACACATCTAAACATTGGTACCCTGCTGCTTCCCTTTCCATCGATCAACA
GTGTTCTTTCATCTTTGAAGAATCCCAAATGAAaCACAAAAAGACCACAT
TCGTCAGCATCGAAGAAGtttatcaacaattcaaaaagCAACCTTCAAGC
ATGGTTTGTTCAACACAAAACGTCATCTCTCAAACGAGAAGCCTTACAAA
AGGTATGCGACCAGAGGTGGCGTATTTCTTCGAAGTTGATTTGACGCACA
TGAAGGACATTTCCATCATTTCTATCGGTTATACATGCTGCGGAAAAGAA
AGCCAGCCAATCACAATCAAAATATCCATGGGATTCTTGAAGAGTGTCAA
AGAACGAGACGTCTTGGGCTGTGGGTTGATTCTGCAACCTGTCAAACTAA
TTTTTCTTACTAAAGGGACATCTGTTATTTGGGAGATGGCGCTCGCTGAA
TATCTTGATGTTGAAAAGTTTTCTGATGAACGGATTCTTCAATTGCTCCC
TTTTGTCAACGTGGAGAATGTGCTGATGAACGTCGGACAAAGTTGTTTTG
TTTACGAAGCGGCAAACCTCAACAAGTCCAAACAGAAATTCCTCAGCTTT
GTGCTTAGTTTGATCGATAaggaagaaaaacaatgatttttttatttttt
tatttagaagaTAAATATGATTGATTGTGTTCCATTAAGCGAGTGAAATT
ACTATTGAGGTGTCGCTCGTTCGATTTCTTTTCGAATGAGATTtgtgttt
ttgtattttattttcatatggatttataactttttataatttttattttt
aatttcagaaGAATGATTTCTTTACTCGTTTCAT
Run BLAST on NCBI

protein sequence of TCONS_00044850-protein

>TCONS_00044850-protein ID=TCONS_00044850-protein|Name=TCONS_00044850-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
GWANEECHFNARKGIGVGDTSNSCGFDGTRCKVWSGPSVDVAMENDYGLS
WQIGDVLSVLLSWSGVVSFWLNGKDLGAALKNVDTSKHWYPAASLSIDQQ
CSFIFEESQMKHKKTTFVSIEEVYQQFKKQPSSMVCSTQNVISQTRSLTK
GMRPEVAYFFEVDLTHMKDISIISIGYTCCGKESQPITIKISMGFLKSVK
ERDVLGCGLILQPVKLIFLTKGTSVIWEMALAEYLDVEKFSDERILQLLP
FVNVENVLMNVGQSCFVYEAANLNKSKQKFLSFVLSLIDKEEKQ
Run BLAST on NCBI

transcript from alignment at sc0006315:2..1523-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044850 ID=TCONS_00044850|Name=TCONS_00044850|organism=Clytia hemisphaerica|type=transcript|length=1522bp|location=Sequence derived from alignment at sc0006315:2..1523- (Clytia hemisphaerica)
AGGTTGGGCGAACGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGCG
TTGGAGATACGAGCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGTA
TGGAGTGGTCCTTCCGTCGATGTCGCCATGGAGAATGATTATGGATTGTA
AGCACTTGTCTTTCTATTCCGATGTTCATAAGTTTCCAACCCATCACTTG
TATTGTTTTGTATGCTTTTTAAATCTCCTTTTGTGCACTAGGGCGGAAAG
TAGAGAACGAAAATGGTGATTATTTTTCAAAATCGAAACTCAAATATAGG
GAAGTACTTTTATACACAAATATATTTTTAATACTGACAACTTGCTTCTA
CAAGATCTTGGCAGATTGGTGACGTATTAAGCGTGTTGTTGTCATGGAGT
GGAGTGGTGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAA
AAATGTAGACACATCTAAACATTGGTACCCTGCTGCTTCCCTTTCCATCG
ATCAACAGTGTTCTTTCATCTTTGAAGAATCCCAAATGAAGTAAGTAACG
ATTCGATCAAAGCTTTCATCGCAAAACACCCTCGTTTGTCTTCAGTTTGG
TATTCCCTCGATTATTGAACTTCTATCGCCACCTTTCTTTTTCTCGAGTG
TCCTGAGCAACTTTTTTTTTCATTTTTCTTCAGACACAAAAAGACCACAT
TCGTCAGCATCGAAGAAGTTTATCAACAATTCAAAAAGCAACCTTCAAGC
ATGGTTTGTTCAACACAAAACGTCATCTCTCAAACGAGAAGCCTTACAAA
AGGTTCGAAATCTTTTGTTGTCTTTCTCATTTTATCATGAAATAGTGATC
TGACAATCACTTTCATTGTTTTCTGTCGTTTGCATTTCAGGTATGCGACC
AGAGGTGGCGTATTTCTTCGAAGTTGATTTGACGCACATGAAGGACATTT
CCATCATTTCTATCGGTTATACATGCTGCGGAAAAGAAAGCCAGCCAATC
ACAATCAAAATATCCATGGGATTCTTGAAGAGTGTCAAAGAACGAGACGT
CTTGGGCTGTGGGTTGATTCTGCAACCTGTCAAACTAATTTTTCTTACTA
AAGGGACATCTGTTATTTGGGAGATGGCGCTCGCTGAATATCTTGATGTT
GAAAAGTTTTCTGATGAACGGATTCTTCAATTGCTCCCTTTTGTCAACGT
GGAGAATGTGCTGATGAACGTCGGACAAAGTTGTTTTGTTTACGAAGCGG
CAAACCTCAACAAGTCCAAACAGAAATTCCTCAGCTTTGTGCTTAGTTTG
ATCGATAAGGAAGAAAAACAATGATTTTTTTATTTTTTTATTTAGAAGAT
AAATATGATTGATTGTGTTCCATTAAGCGAGTGAAATTACTATTGAGGTG
TCGCTCGTTCGATTTCTTTTCGAATGAGATTTGTGTTTTTGTATTTTATT
TTCATATGGATTTATAACTTTTTATAATTTTTATTTTTAATTTCAGAAGA
ATGATTTCTTTACTCGTTTCAT

Coding sequence (CDS) from alignment at sc0006315:2..1523-

>TCONS_00044850 ID=TCONS_00044850|Name=TCONS_00044850|organism=Clytia hemisphaerica|type=CDS|length=3540bp|location=Sequence derived from alignment at sc0006315:2..1523- (Clytia hemisphaerica)
GTATGCGACCAGAGGTGGCGTATTTCTTCGAAGTTGATTTGACGCACATG
AAGGACATTTCCATCATTTCTATCGGTTATACATGCTGCGGAAAAGAAAG
CCAGCCAATCACAATCAAAATATCCATGGGATTCTTGAAGAGTGTCAAAG
AACGAGACGTCTTGGGCTGTGGGTTGATTCTGCAACCTGTCAAACTAATT
TTTCTTACTAAAGGGACATCTGTTATTTGGGAGATGGCGCTCGCTGAATA
TCTTGATGTTGAAAAGTTTTCTGATGAACGGATTCTTCAATTGCTCCCTT
TTGTCAACGTGGAGAATGTGCTGATGAACGTCGGACAAAGTTGTTTTGTT
TACGAAGCGGCAAACCTCAACAAGTCCAAACAGAAATTCCTCAGCTTTGT
GCTTAGTTTGATCGATAAGGAAGAAAAACAATGAACACAAAAAGACCACA
TTCGTCAGCATCGAAGAAGTTTATCAACAATTCAAAAAGCAACCTTCAAG
CATGGTTTGTTCAACACAAAACGTCATCTCTCAAACGAGAAGCCTTACAA
AAGATCTTGGCAGATTGGTGACGTATTAAGCGTGTTGTTGTCATGGAGTG
GAGTGGTGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAAA
AATGTAGACACATCTAAACATTGGTACCCTGCTGCTTCCCTTTCCATCGA
TCAACAGTGTTCTTTCATCTTTGAAGAATCCCAAATGAAGGTTGGGCGAA
CGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGCGTTGGAGATACGA
GCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGTATGGAGTGGTCCT
TCCGTCGATGTCGCCATGGAGAATGATTATGGATTGTATGCGACCAGAGG
TGGCGTATTTCTTCGAAGTTGATTTGACGCACATGAAGGACATTTCCATC
ATTTCTATCGGTTATACATGCTGCGGAAAAGAAAGCCAGCCAATCACAAT
CAAAATATCCATGGGATTCTTGAAGAGTGTCAAAGAACGAGACGTCTTGG
GCTGTGGGTTGATTCTGCAACCTGTCAAACTAATTTTTCTTACTAAAGGG
ACATCTGTTATTTGGGAGATGGCGCTCGCTGAATATCTTGATGTTGAAAA
GTTTTCTGATGAACGGATTCTTCAATTGCTCCCTTTTGTCAACGTGGAGA
ATGTGCTGATGAACGTCGGACAAAGTTGTTTTGTTTACGAAGCGGCAAAC
CTCAACAAGTCCAAACAGAAATTCCTCAGCTTTGTGCTTAGTTTGATCGA
TAAGGAAGAAAAACAATGAACACAAAAAGACCACATTCGTCAGCATCGAA
GAAGTTTATCAACAATTCAAAAAGCAACCTTCAAGCATGGTTTGTTCAAC
ACAAAACGTCATCTCTCAAACGAGAAGCCTTACAAAAGATCTTGGCAGAT
TGGTGACGTATTAAGCGTGTTGTTGTCATGGAGTGGAGTGGTGTCTTTCT
GGTTGAATGGCAAGGATCTTGGAGCAGCTCTCAAAAATGTAGACACATCT
AAACATTGGTACCCTGCTGCTTCCCTTTCCATCGATCAACAGTGTTCTTT
CATCTTTGAAGAATCCCAAATGAAGGTTGGGCGAACGAAGAATGCCATTT
CAACGCGCGGAAAGGGATCGGCGTTGGAGATACGAGCAATTCATGCGGCT
TCGATGGCACCAGGTGTAAAGTATGGAGTGGTCCTTCCGTCGATGTCGCC
ATGGAGAATGATTATGGATTGTATGCGACCAGAGGTGGCGTATTTCTTCG
AAGTTGATTTGACGCACATGAAGGACATTTCCATCATTTCTATCGGTTAT
ACATGCTGCGGAAAAGAAAGCCAGCCAATCACAATCAAAATATCCATGGG
ATTCTTGAAGAGTGTCAAAGAACGAGACGTCTTGGGCTGTGGGTTGATTC
TGCAACCTGTCAAACTAATTTTTCTTACTAAAGGGACATCTGTTATTTGG
GAGATGGCGCTCGCTGAATATCTTGATGTTGAAAAGTTTTCTGATGAACG
GATTCTTCAATTGCTCCCTTTTGTCAACGTGGAGAATGTGCTGATGAACG
TCGGACAAAGTTGTTTTGTTTACGAAGCGGCAAACCTCAACAAGTCCAAA
CAGAAATTCCTCAGCTTTGTGCTTAGTTTGATCGATAAGGAAGAAAAACA
ATGAACACAAAAAGACCACATTCGTCAGCATCGAAGAAGTTTATCAACAA
TTCAAAAAGCAACCTTCAAGCATGGTTTGTTCAACACAAAACGTCATCTC
TCAAACGAGAAGCCTTACAAAAGATCTTGGCAGATTGGTGACGTATTAAG
CGTGTTGTTGTCATGGAGTGGAGTGGTGTCTTTCTGGTTGAATGGCAAGG
ATCTTGGAGCAGCTCTCAAAAATGTAGACACATCTAAACATTGGTACCCT
GCTGCTTCCCTTTCCATCGATCAACAGTGTTCTTTCATCTTTGAAGAATC
CCAAATGAAGGTTGGGCGAACGAAGAATGCCATTTCAACGCGCGGAAAGG
GATCGGCGTTGGAGATACGAGCAATTCATGCGGCTTCGATGGCACCAGGT
GTAAAGTATGGAGTGGTCCTTCCGTCGATGTCGCCATGGAGAATGATTAT
GGATTGTATGCGACCAGAGGTGGCGTATTTCTTCGAAGTTGATTTGACGC
ACATGAAGGACATTTCCATCATTTCTATCGGTTATACATGCTGCGGAAAA
GAAAGCCAGCCAATCACAATCAAAATATCCATGGGATTCTTGAAGAGTGT
CAAAGAACGAGACGTCTTGGGCTGTGGGTTGATTCTGCAACCTGTCAAAC
TAATTTTTCTTACTAAAGGGACATCTGTTATTTGGGAGATGGCGCTCGCT
GAATATCTTGATGTTGAAAAGTTTTCTGATGAACGGATTCTTCAATTGCT
CCCTTTTGTCAACGTGGAGAATGTGCTGATGAACGTCGGACAAAGTTGTT
TTGTTTACGAAGCGGCAAACCTCAACAAGTCCAAACAGAAATTCCTCAGC
TTTGTGCTTAGTTTGATCGATAAGGAAGAAAAACAATGAACACAAAAAGA
CCACATTCGTCAGCATCGAAGAAGTTTATCAACAATTCAAAAAGCAACCT
TCAAGCATGGTTTGTTCAACACAAAACGTCATCTCTCAAACGAGAAGCCT
TACAAAAGATCTTGGCAGATTGGTGACGTATTAAGCGTGTTGTTGTCATG
GAGTGGAGTGGTGTCTTTCTGGTTGAATGGCAAGGATCTTGGAGCAGCTC
TCAAAAATGTAGACACATCTAAACATTGGTACCCTGCTGCTTCCCTTTCC
ATCGATCAACAGTGTTCTTTCATCTTTGAAGAATCCCAAATGAAGGTTGG
GCGAACGAAGAATGCCATTTCAACGCGCGGAAAGGGATCGGCGTTGGAGA
TACGAGCAATTCATGCGGCTTCGATGGCACCAGGTGTAAAGTATGGAGTG
GTCCTTCCGTCGATGTCGCCATGGAGAATGATTATGGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028454XLOC_028454Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044850-exon-sc0006315-1575043694:1377..1523TCONS_00044850-exon-sc0006315-1575043694:1377..1523Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1575043694:984..1169TCONS_00044850-exon-sc0006315-1575043694:984..1169Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1575043694:722..840TCONS_00044850-exon-sc0006315-1575043694:722..840Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1575043694:2..633TCONS_00044850-exon-sc0006315-1575043694:2..633Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1510915933:1377..1523TCONS_00044850-exon-sc0006315-1510915933:1377..1523Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1510915933:984..1169TCONS_00044850-exon-sc0006315-1510915933:984..1169Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1510915933:722..840TCONS_00044850-exon-sc0006315-1510915933:722..840Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1510915933:2..633TCONS_00044850-exon-sc0006315-1510915933:2..633Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1491911889:1377..1523TCONS_00044850-exon-sc0006315-1491911889:1377..1523Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1491911889:984..1169TCONS_00044850-exon-sc0006315-1491911889:984..1169Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1491911889:722..840TCONS_00044850-exon-sc0006315-1491911889:722..840Clytia hemisphaericaexon
TCONS_00044850-exon-sc0006315-1491911889:2..633TCONS_00044850-exon-sc0006315-1491911889:2..633Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044850-proteinTCONS_00044850-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006315supercontigsc0006315:2..1523 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.98853	7.71061	3.61496	2.27802	41.3779	27.8195	24.0935	26.6817	16.2418	17.9309	13.5362	10.507	11.114	9.21673	11.5984	14.6868	22.8041	20.0383	7.63407	9.5031	13.6319	14.1382	15.4672	13.4705	13.677	14.0572	12.964	9.3333	11.5526	9.43531
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR013320ConA-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044850 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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