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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044857 ID=TCONS_00044857|Name=TCONS_00044857|organism=Clytia hemisphaerica|type=transcript|length=1553bp
GGGGAGCATAATTTGATGTTATTTAAAAACACTTCGGGTAATTTAAATAA
ACTCAACTACTTGCGTTTTTGAAGCATTGAGTTTTTATTCGTCCTTGTTT
ATGTCTGAGTCTCTGTATGTTTGTTGATGCTGTTTAAGAAAAAATGAATC
TTGGAGATGAAAGAAATTTAGCTCACAGTTCTGTCGGTAGAAATGCAATG
GTGGAAATGGATAGTGGAGAGATTGTGAaactgaaaaaagaacatcaaaa
agAGATTGAGAAACTCAAAATGGAATTTAAGATTCAANTGGAAATGGATA
GTGGAGAGATTGTGAaactgaaaaaagaacatcaaaaagAGATTGAGAAA
CTCAAAATGGAATTTAAGATTCAACAACTGGAATCTGAGAATgagaaaac
gttgaaaattacgcagctagaaaaagaaaatcaaactttATCTCATCAAT
TTGAGATGTTCAAATTAAAGAATTCTCGTGAATCTCAATCAAGTCAAGTT
CAAGCTGATCAACAACTCCAAAATAAGTTAGTTGAAAAGGAGAAACAATT
AGTAGCCAAAGAGCACGAAATGGTTTTGTACAAGAAAGAACAagaaaatg
aatggaaaatgaaaataaaagatttggaaaatgaACACAAAGTTAAAATG
TTACAAACGGAGACAAAGTTGAACGAGATGGAGAAAGAAATGACAGAAAA
AGAAGCAACTGTCCAACATTTGAAcagagaaattgaaaatttgaaaagag
tCAATCCAAACCAAAACCAAGCTGCAGATAAAGTTGAGGAAAATAGGACG
ACGATCGATCGTTTGATTTGGGGAGCAAAGTATTTTCACGAAGGAAATAA
ATCTTCACTTTTGTACCCTTCTTATGGTGACTGGTACAAAGCGATTTCCG
CGATGATGGGGGATAAGAAAGTGTTCAAGAAGGATAAATATTTGTTCATG
AGAAAGGAATTCAATATGGACCATAAATATCTAGATTTCGTGAACAGAAA
AGACAACAGTTACAAAGAAGAATTGGGGGATTTTCTTGTTGAAGATTTGA
AAATTGCATTGGAAACTGCAACTGTCTTTCTTCTCCATACAAAGGATTTT
GGGAAACGTTTAAAGTTTGAACGAAAGAATCAGACCGCTTCTTATGAATA
TTGGTGTGTTTATAatgtttcaaaagatttttatttcgGTGATAAACGAT
CTGCAATTGTTTTTGGAATTTTGAATTGAATCAAATATACCAAAGATTGT
AACGAATAAAACATTTTAATCAGAAAGATTAggttttgattgttttatcA
TTTGTAAGTTCATTTTTGAGAGCAGAATTTAATCAGGTGGGATGAGtacc
agctggcacaaaacgttcTTTTAACGTACATTTAACGTTTAATGGACGCT
AGCGATGTCAGATGGACGTTATCATGACGTTCTGTGCCAGCCAAGACATG
ACCCTTTTTAGTGACGTATACGGAACCCCAGCTTCACTCGAAAAGAAAGC
AATTGCACTACAAAACCTTTCCCACAGTTTTGTGAACCTGAGGACAAAAG
AAC Run BLAST on NCBI protein sequence of TCONS_00044857-protein >TCONS_00044857-protein ID=TCONS_00044857-protein|Name=TCONS_00044857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
MNLGDERNLAHSSVGRNAMVEMDSGEIVKLKKEHQKEIEKLKMEFKIQXE
MDSGEIVKLKKEHQKEIEKLKMEFKIQQLESENEKTLKITQLEKENQTLS
HQFEMFKLKNSRESQSSQVQADQQLQNKLVEKEKQLVAKEHEMVLYKKEQ
ENEWKMKIKDLENEHKVKMLQTETKLNEMEKEMTEKEATVQHLNREIENL
KRVNPNQNQAADKVEENRTTIDRLIWGAKYFHEGNKSSLLYPSYGDWYKA
ISAMMGDKKVFKKDKYLFMRKEFNMDHKYLDFVNRKDNSYKEELGDFLVE
DLKIALETATVFLLHTKDFGKRLKFERKNQTASYEYWCVYNVSKDFYFGD
KRSAIVFGILN Run BLAST on NCBI transcript from alignment at sc0006330:4..1556 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044857 ID=TCONS_00044857|Name=TCONS_00044857|organism=Clytia hemisphaerica|type=transcript|length=1553bp|location=Sequence derived from alignment at sc0006330:4..1556 (Clytia hemisphaerica)
GTTCTTTTGTCCTCAGGTTCACAAAACTGTGGGAAAGGTTTTGTAGTGCA
ATTGCTTTCTTTTCGAGTGAAGCTGGGGTTCCGTATACGTCACTAAAAAG
GGTCATGTCTTGGCTGGCACAGAACGTCATGATAACGTCCATCTGACATC
GCTAGCGTCCATTAAACGTTAAATGTACGTTAAAAgaacgttttgtgcca
gctggtaCTCATCCCACCTGATTAAATTCTGCTCTCAAAAATGAACTTAC
AAATgataaaacaatcaaaaccTAATCTTTCTGATTAAAATGTTTTATTC
GTTACAATCTTTGGTATATTTGATTCAATTCAAAATTCCAAAAACAATTG
CAGATCGTTTATCACcgaaataaaaatcttttgaaacatTATAAACACAC
CAATATTCATAAGAAGCGGTCTGATTCTTTCGTTCAAACTTTAAACGTTT
CCCAAAATCCTTTGTATGGAGAAGAAAGACAGTTGCAGTTTCCAATGCAA
TTTTCAAATCTTCAACAAGAAAATCCCCCAATTCTTCTTTGTAACTGTTG
TCTTTTCTGTTCACGAAATCTAGATATTTATGGTCCATATTGAATTCCTT
TCTCATGAACAAATATTTATCCTTCTTGAACACTTTCTTATCCCCCATCA
TCGCGGAAATCGCTTTGTACCAGTCACCATAAGAAGGGTACAAAAGTGAA
GATTTATTTCCTTCGTGAAAATACTTTGCTCCCCAAATCAAACGATCGAT
CGTCGTCCTATTTTCCTCAACTTTATCTGCAGCTTGGTTTTGGTTTGGAT
TGactcttttcaaattttcaatttctctgTTCAAATGTTGGACAGTTGCT
TCTTTTTCTGTCATTTCTTTCTCCATCTCGTTCAACTTTGTCTCCGTTTG
TAACATTTTAACTTTGTGTtcattttccaaatcttttattttcattttcc
attcattttctTGTTCTTTCTTGTACAAAACCATTTCGTGCTCTTTGGCT
ACTAATTGTTTCTCCTTTTCAACTAACTTATTTTGGAGTTGTTGATCAGC
TTGAACTTGACTTGATTGAGATTCACGAGAATTCTTTAATTTGAACATCT
CAAATTGATGAGATaaagtttgattttctttttctagctgcgtaattttc
aacgttttctcATTCTCAGATTCCAGTTGTTGAATCTTAAATTCCATTTT
GAGTTTCTCAATCTctttttgatgttcttttttcagttTCACAATCTCTC
CACTATCCATTTCCANTTGAATCTTAAATTCCATTTTGAGTTTCTCAATC
TctttttgatgttcttttttcagttTCACAATCTCTCCACTATCCATTTC
CACCATTGCATTTCTACCGACAGAACTGTGAGCTAAATTTCTTTCATCTC
CAAGATTCATTTTTTCTTAAACAGCATCAACAAACATACAGAGACTCAGA
CATAAACAAGGACGAATAAAAACTCAATGCTTCAAAAACGCAAGTAGTTG
AGTTTATTTAAATTACCCGAAGTGTTTTTAAATAACATCAAATTATGCTC
CCC Coding sequence (CDS) from alignment at sc0006330:4..1556 >TCONS_00044857 ID=TCONS_00044857|Name=TCONS_00044857|organism=Clytia hemisphaerica|type=CDS|length=1086bp|location=Sequence derived from alignment at sc0006330:4..1556 (Clytia hemisphaerica)
TCAATTCAAAATTCCAAAAACAATTGCAGATCGTTTATCACcgaaataaa
aatcttttgaaacatTATAAACACACCAATATTCATAAGAAGCGGTCTGA
TTCTTTCGTTCAAACTTTAAACGTTTCCCAAAATCCTTTGTATGGAGAAG
AAAGACAGTTGCAGTTTCCAATGCAATTTTCAAATCTTCAACAAGAAAAT
CCCCCAATTCTTCTTTGTAACTGTTGTCTTTTCTGTTCACGAAATCTAGA
TATTTATGGTCCATATTGAATTCCTTTCTCATGAACAAATATTTATCCTT
CTTGAACACTTTCTTATCCCCCATCATCGCGGAAATCGCTTTGTACCAGT
CACCATAAGAAGGGTACAAAAGTGAAGATTTATTTCCTTCGTGAAAATAC
TTTGCTCCCCAAATCAAACGATCGATCGTCGTCCTATTTTCCTCAACTTT
ATCTGCAGCTTGGTTTTGGTTTGGATTGactcttttcaaattttcaattt
ctctgTTCAAATGTTGGACAGTTGCTTCTTTTTCTGTCATTTCTTTCTCC
ATCTCGTTCAACTTTGTCTCCGTTTGTAACATTTTAACTTTGTGTtcatt
ttccaaatcttttattttcattttccattcattttctTGTTCTTTCTTGT
ACAAAACCATTTCGTGCTCTTTGGCTACTAATTGTTTCTCCTTTTCAACT
AACTTATTTTGGAGTTGTTGATCAGCTTGAACTTGACTTGATTGAGATTC
ACGAGAATTCTTTAATTTGAACATCTCAAATTGATGAGATaaagtttgat
tttctttttctagctgcgtaattttcaacgttttctcATTCTCAGATTCC
AGTTGTTGAATCTTAAATTCCATTTTGAGTTTCTCAATCTctttttgatg
ttcttttttcagttTCACAATCTCTCCACTATCCATTTCCANTTGAATCT
TAAATTCCATTTTGAGTTTCTCAATCTctttttgatgttcttttttcagt
tTCACAATCTCTCCACTATCCATTTCCACCATTGCATTTCTACCGACAGA
ACTGTGAGCTAAATTTCTTTCATCTCCAAGATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044857-exon-sc0006330-1491911889:4..1556 | TCONS_00044857-exon-sc0006330-1491911889:4..1556 | Clytia hemisphaerica | exon |
| TCONS_00044857-exon-sc0006330-1510915933:4..1556 | TCONS_00044857-exon-sc0006330-1510915933:4..1556 | Clytia hemisphaerica | exon |
| TCONS_00044857-exon-sc0006330-1575043694:4..1556 | TCONS_00044857-exon-sc0006330-1575043694:4..1556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006330 | supercontig | sc0006330:4..1556 . |
Blast
The following BLAST results are available for this feature:
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