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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044860 ID=TCONS_00044860|Name=TCONS_00044860|organism=Clytia hemisphaerica|type=transcript|length=541bp
TGAATTATGAAAACATGAATCTGATTTTCGTGGAGTGGCATGTGGGTTCC
GCTTTCCCATATCACCAAGCTGTCGGTAACACGAGAATGGTCGGAGCACA
GGTTGCCCACATGATTGAGCTTATCAAGAACGACACCGGAATAAACTGGG
ATAAACTTCGGTTAATCGGATTCTCACTTGGTGCACACGTCATGGGATAC
GCTGGCCGTAACTTGAGAAGAAAAGGAATGCTCTTACGTCGAATCTCAGC
CTTGGACCCTGCATCTCCTTATTTCGAAAACAAGCATCCGGACCGACGTA
TCGATCCTACCGACGCCGAATTTGTTGACGTAATACATACAGACGCGAAG
ACGTTAGTCGTTAACGGCTTCGGTACGACGCAAGAGATGGGACATATTGA
TTTCTTCCCTAACGGAGGTTTTGATCAAGTTGGTTGTGGCAATTTGGACG
TTAGTGTAGTTCAATATTTAGCCTGTAGTCATTACAGAGTATTACGTTAC
TACATGGAATCAATCAATAGCCCGTGTCCGTATTACGGTTA Run BLAST on NCBI protein sequence of TCONS_00044860-protein >TCONS_00044860-protein ID=TCONS_00044860-protein|Name=TCONS_00044860-protein|organism=Clytia hemisphaerica|type=polypeptide|length=179bp
NYENMNLIFVEWHVGSAFPYHQAVGNTRMVGAQVAHMIELIKNDTGINWD
KLRLIGFSLGAHVMGYAGRNLRRKGMLLRRISALDPASPYFENKHPDRRI
DPTDAEFVDVIHTDAKTLVVNGFGTTQEMGHIDFFPNGGFDQVGCGNLDV
SVVQYLACSHYRVLRYYMESINSPCPYYG Run BLAST on NCBI transcript from alignment at sc0006332:1..2032+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044860 ID=TCONS_00044860|Name=TCONS_00044860|organism=Clytia hemisphaerica|type=transcript|length=2032bp|location=Sequence derived from alignment at sc0006332:1..2032+ (Clytia hemisphaerica)
TGAATTATGAAAACATGAATCTGATTTTCGTGGAGTGGCATGTGGGTTCC
GCTTTCCCATATCACCAAGCTGTCGGTAACACGAGAATGGTCGGTAAGTT
AACGACAAAATTATTCGTCACTGAAGCGTGGTTTCCACCAACTGTCACAT
TACCATAGGAGAACTAATCTTCGTGAAAACTTATTTTCGTGGAGCTTATT
TTTGCGGTGCGATGGTACTAAATCGGCACAttttgcggaactaattttcg
cgtttgAAACCCTTTCATATTCCTAGAGGTTTTTGAgggtttttagtaaa
aattgcatttcgtggaactaattttcgcggtagacaccaaaaacgcgaaa
attagttcccgcgaaaattaggtccgcaaaaaatagttcccttaagAAAT
GCAAAAGTACGAAACTGCACTGCGATAATGATGATTTCATTAACTCACAA
AATGGTGTGCGATAGCCACCACTATCGTACAGTGCGATGGACAAAACTAA
TCACCAAAAGGAGGTAGCTAATAAATTGCAAAAGATTCCTCCATCGCATA
GTGCGATAGAGGTGACTTTTCTCCCCTTTTTTGACACCGCgcaccaaatt
ttttttgagaaattcttttgttttatattctgttttgtcagcatagaggc
ACGCGCATCTTttctataatataaaaaatatctttcaatctGTCTTTATC
CAGGAGCACAGGTTGCCCACATGATTGAGCTTATCAAGAACGACACCGGA
ATAAACTGGGATAAACTTCGGTTAATCGGATTCTCACTTGGTGCACACGT
CATGGGATACGCTGGCCGTAACTTGAGAAGAAAAGGAATGCTCTTACGTC
GAATCTCAGGTAATATTTTGGTTGAAATTctgtatttttttatctttcgt
gctgaaatcaaaagtttttcaaaagccaATATTGATAAATTTAAGACTGA
TTCAATGAGAACTGACTTTGGCAAGGACCTATTTTGGCAAGAACATATTA
TCGAATGCAGGGAAGATTTGTTCTCTTTAAACTAAAAATGTGAATTTGAG
GTGAAGATTAAGGGTTctttttgaaatcataaaatgaaCTAGCTTTTAAA
GCATTTATTTGTCCTATTTAGTCTTTTAAACAATTTAAATACAAATTCCT
AGCCTTGGACCCTGCATCTCCTTATTTCGAAAACAAGCATCCGGACCGAC
GTATCGATCCTACCGACGCCGAATTTGTTGACGTAATACATACAGACGCG
AAGACGTTAGTCGTTAACGGCTTCGGTACGACGCAAGAGATGGGACATAT
TGATTTCTTCCCTAACGGAGGTTTTGATCAAGTTGGTTGTGGCAATTTGG
ACGTTAGTAAGTAGAAGTatataaagttttgaaaattcaacttGCTTACT
TTAGCTATTATTTGGGGATTctccaaaaattttgttttacttaaccctat
tattattagacaccttttcgaccgtagcatttttttgtccgcttatCTCA
CTAAAATCgttccagtctttttttcgcacctatagacaataaaaagatat
gtcaaaaaaggattgggtcgAGGGatgattaaataataaagtggtacgcg
cctgaccgcgcgactacgatcgaaaaggtgtattaacccaagcttttttg
atttttgtagctccgttggagaacatctgtaccaatatttatggccatag
ctcttctagagcaaacataatcgagggtggtataTTCTAAGCCCCCttgg
gctaatagggttaaccTGTTTGTTACAAATTATCTGTCCGTTAGAAAATG
TAAAACCattgaaatttatgaaaaatatttactttagTAAGAAATTCCAA
TGGAGAAATCCTTTTTAAAATTAACTTCATTAGACTAATTCTTAAAGATT
TCTAAGTTGAATTTTCTTGAGGTTACTTTTATTCTACTTTTTAGGTGTAG
TTCAATATTTAGCCTGTAGTCATTACAGAGTATTACGTTACTACATGGAA
TCAATCAATAGCCCGTGTCCGTATTACGGTTA Coding sequence (CDS) from alignment at sc0006332:1..2032+ >TCONS_00044860 ID=TCONS_00044860|Name=TCONS_00044860|organism=Clytia hemisphaerica|type=CDS|length=2148bp|location=Sequence derived from alignment at sc0006332:1..2032+ (Clytia hemisphaerica)
AATTATGAAAACATGAATCTGATTTTCGTGGAGTGGCATGTGGGTTCCGC
TTTCCCATATCACCAAGCTGTCGGTAACACGAGAATGGTCGGAGCACAGG
TTGCCCACATGATTGAGCTTATCAAGAACGACACCGGAATAAACTGGGAT
AAACTTCGGTTAATCGGATTCTCACTTGGTGCACACGTCATGGGATACGC
TGGCCGTAACTTGAGAAGAAAAGGAATGCTCTTACGTCGAATCTCAGCCT
TGGACCCTGCATCTCCTTATTTCGAAAACAAGCATCCGGACCGACGTATC
GATCCTACCGACGCCGAATTTGTTGACGTAATACATACAGACGCGAAGAC
GTTAGTCGTTAACGGCTTCGGTACGACGCAAGAGATGGGACATATTGATT
TCTTCCCTAACGGAGGTTTTGATCAAGTTGGTTGTGGCAATTTGGACGTT
AGTGTAGTTCAATATTTAGCCTGTAGTCATTACAGAGTATTACGTTACTA
CATGGAATCAATCAATAGCCCGTGTCCGTATTACGGTAATTATGAAAACA
TGAATCTGATTTTCGTGGAGTGGCATGTGGGTTCCGCTTTCCCATATCAC
CAAGCTGTCGGTAACACGAGAATGGTCGGAGCACAGGTTGCCCACATGAT
TGAGCTTATCAAGAACGACACCGGAATAAACTGGGATAAACTTCGGTTAA
TCGGATTCTCACTTGGTGCACACGTCATGGGATACGCTGGCCGTAACTTG
AGAAGAAAAGGAATGCTCTTACGTCGAATCTCAGCCTTGGACCCTGCATC
TCCTTATTTCGAAAACAAGCATCCGGACCGACGTATCGATCCTACCGACG
CCGAATTTGTTGACGTAATACATACAGACGCGAAGACGTTAGTCGTTAAC
GGCTTCGGTACGACGCAAGAGATGGGACATATTGATTTCTTCCCTAACGG
AGGTTTTGATCAAGTTGGTTGTGGCAATTTGGACGTTAGTGTAGTTCAAT
ATTTAGCCTGTAGTCATTACAGAGTATTACGTTACTACATGGAATCAATC
AATAGCCCGTGTCCGTATTACGGTAATTATGAAAACATGAATCTGATTTT
CGTGGAGTGGCATGTGGGTTCCGCTTTCCCATATCACCAAGCTGTCGGTA
ACACGAGAATGGTCGGAGCACAGGTTGCCCACATGATTGAGCTTATCAAG
AACGACACCGGAATAAACTGGGATAAACTTCGGTTAATCGGATTCTCACT
TGGTGCACACGTCATGGGATACGCTGGCCGTAACTTGAGAAGAAAAGGAA
TGCTCTTACGTCGAATCTCAGCCTTGGACCCTGCATCTCCTTATTTCGAA
AACAAGCATCCGGACCGACGTATCGATCCTACCGACGCCGAATTTGTTGA
CGTAATACATACAGACGCGAAGACGTTAGTCGTTAACGGCTTCGGTACGA
CGCAAGAGATGGGACATATTGATTTCTTCCCTAACGGAGGTTTTGATCAA
GTTGGTTGTGGCAATTTGGACGTTAGTGTAGTTCAATATTTAGCCTGTAG
TCATTACAGAGTATTACGTTACTACATGGAATCAATCAATAGCCCGTGTC
CGTATTACGGTAATTATGAAAACATGAATCTGATTTTCGTGGAGTGGCAT
GTGGGTTCCGCTTTCCCATATCACCAAGCTGTCGGTAACACGAGAATGGT
CGGAGCACAGGTTGCCCACATGATTGAGCTTATCAAGAACGACACCGGAA
TAAACTGGGATAAACTTCGGTTAATCGGATTCTCACTTGGTGCACACGTC
ATGGGATACGCTGGCCGTAACTTGAGAAGAAAAGGAATGCTCTTACGTCG
AATCTCAGCCTTGGACCCTGCATCTCCTTATTTCGAAAACAAGCATCCGG
ACCGACGTATCGATCCTACCGACGCCGAATTTGTTGACGTAATACATACA
GACGCGAAGACGTTAGTCGTTAACGGCTTCGGTACGACGCAAGAGATGGG
ACATATTGATTTCTTCCCTAACGGAGGTTTTGATCAAGTTGGTTGTGGCA
ATTTGGACGTTAGTGTAGTTCAATATTTAGCCTGTAGTCATTACAGAGTA
TTACGTTACTACATGGAATCAATCAATAGCCCGTGTCCGTATTACGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044860-exon-sc0006332-1491911889:1..93 | TCONS_00044860-exon-sc0006332-1491911889:1..93 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1510915933:1..93 | TCONS_00044860-exon-sc0006332-1510915933:1..93 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1575043694:1..93 | TCONS_00044860-exon-sc0006332-1575043694:1..93 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1491911889:704..859 | TCONS_00044860-exon-sc0006332-1491911889:704..859 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1510915933:704..859 | TCONS_00044860-exon-sc0006332-1510915933:704..859 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1575043694:704..859 | TCONS_00044860-exon-sc0006332-1575043694:704..859 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1491911889:1153..1356 | TCONS_00044860-exon-sc0006332-1491911889:1153..1356 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1510915933:1153..1356 | TCONS_00044860-exon-sc0006332-1510915933:1153..1356 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1575043694:1153..1356 | TCONS_00044860-exon-sc0006332-1575043694:1153..1356 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1491911889:1945..2032 | TCONS_00044860-exon-sc0006332-1491911889:1945..2032 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1510915933:1945..2032 | TCONS_00044860-exon-sc0006332-1510915933:1945..2032 | Clytia hemisphaerica | exon |
| TCONS_00044860-exon-sc0006332-1575043694:1945..2032 | TCONS_00044860-exon-sc0006332-1575043694:1945..2032 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006332 | supercontig | sc0006332:1..2032 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0052689 | carboxylic ester hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0052689 |
carboxylic ester hydrolase activity |
Blast
BLAST of TCONS_00044860 vs. Swiss-Prot (Human)
Match: LIPR1 (Inactive pancreatic lipase-related protein 1 OS=Homo sapiens GN=PNLIPRP1 PE=1 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.160e-43 Identity = 84/184 (45.65%), Postives = 110/184 (59.78%), Query Frame = 3
Query: 9 ENMNLIFVEWHVGSAFPYHQAVGNTRMVGAQVAHMIELIKNDTGINWDKLRLIGFSLGAHVMGYAGRNLRRKGMLLRRISALDPASPYFENKHPDRRIDPTDAEFVDVIHTDAKTLV-VNGFGTTQEMGHIDFFPNGGFDQVGCGNLDVSVV-----------QYLACSHYRVLRYYMESINSP 524
E +N I V+W GS Y QA N R+VGAQVA M++++ + K+ LIG SLGAHV G AG K L RI+ LDP FE+ + R+DP+DA+FVDVIHTDA L+ GFGT Q+MGH+DFFPNGG GC +S + ++AC+H R +YY+ESI +P
Sbjct: 116 EEVNCICVDWKKGSQATYTQAANNVRVVGAQVAQMLDILLTEYSYPPSKVHLIGHSLGAHVAGEAG----SKTPGLSRITGLDPVEASFESTPEEVRLDPSDADFVDVIHTDAAPLIPFLGFGTNQQMGHLDFFPNGGESMPGCKKNALSQIVDLDGIWAGTRDFVACNHLRSYKYYLESILNP 295
The following BLAST results are available for this feature:
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