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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044880 ID=TCONS_00044880|Name=TCONS_00044880|organism=Clytia hemisphaerica|type=transcript|length=1717bp
GTGTAAAGCCTAAATATTCTCTTTCTGGACTTTAGGGCGTAAATGAAGCA
CTGTTTTACCCACTTGACACTATTTAATAAGTACCAATAATTGCTAGAAT
GTagtaaagaaaaagagaaaaattatcTGAAACGCTATTTTGCATTAATT
AATTTCGCACAATCCCTAAAATGGGACTATTCGCATTAATTCATTCCGCA
AAatagtaaatttttttggggTTCGCTCTCATTAATCAATTCCGCGTTaa
tttattccctttattcaccaaaaataaaagtttgttttacaattttttta
aagtttttaacatACTCAGAATATCACTCGCTCGCCAGATTTTGGTAGTG
AGACACGGGTTGATGTAGATCTTATTTATCCATCCGTATCAGCAAGGAAT
TGCTGTTATGAAAAATTCCAGCATATTTAAACGCGTCCATAGGTGGAATA
TTCTTTCTTATCTctctataatttaagaacttttcatgtttgaggtaatt
ttaattttttctaaaattttgagagtgAATTCCCAGGCTAGTATAATCTG
TACAAAGCTGTATTCAAATACTTGTATAttattgccaccggaggaagcct
aaagcttctgaggatggcattcatagctacACGCATAAGGAAggtgggca
aacatctcataattttgcgcgcgtttttcagtattttagttccacttaac
ggtagcattcttatcttacggtctctctattttttgatttttgatttatt
taacgttggaaaattataaaaaatagtaaCTTAATACTAATACAATCCAA
CAAACTCTAAttaaaatgtataaaaaattctataagatatatataatata
atatatattaaaaaagaaagaaaaaagactgCACTAGATTATGGGTAGAA
GAGGAGATTCATCTGCAATAGTTACATCTACATGAGATGGTAGTCTCAtt
tagtttatttttaaaatccaaGAGAGTTTCGACGCTTTTGATAACACTCG
GAATTTCATTCCAAGTCATTGTGGCGCGAAAGTCAAAAAATCGGTGTAAG
CATAGTTTGGAATTTCAAGCAAATCTCCTGAACTTAGAGCATAtggtatt
ttctttgtttcaaaaatgtcatgcaaaattttagggtccagttttttttt
agatttgaaaaCTTCGCAAAGTATAAGTTTAATATTTCGGTCATGAATTT
TAATCGAATTAGATCTAACAAGAAGTTTTTCAAAGGACTcggtaaagttt
gaaaatcttgcTTTAAGGGCTCTGTACTGTGTTTTATTGATTAATGCATG
TGCAGTTTTAGAACAAAACATCCATATGAGTGGAcaataattgaaaattg
atatAATAAAAGTGAAATATAAGATGTCACGTTTTTCTTGGGACAAAATA
GTCCTTATCCTCATTAAGGctttaattttgttgtttgcatTAGACGTAAT
GTCTAATAGATGAGGATAAAAACAGAGTTTGTCATCAATCAAAACTCCTA
AAAGTTTTACAATTTCAGAACTATCAATAATACTACCATTAATGATCAGA
GAAATATTACATTTTGGACTACCTGGGAAGATGACTTGAAACTTTGCTGA
GTTTGCCACCAATGATTTTTGTGCATACCAATCTAACAttagttttgctt
tttttggAGAGCATAGTGTAAACAATTTCAAGCGTTTTTCCTGCCTCCGA
AAGAGTGTTATCGTCAG Run BLAST on NCBI protein sequence of TCONS_00044880-protein >TCONS_00044880-protein ID=TCONS_00044880-protein|Name=TCONS_00044880-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
LTITLFRRQEKRLKLFTLCSPKKAKLMLDWYAQKSLVANSAKFQVIFPGS
PKCNISLIINGSIIDSSEIVKLLGVLIDDKLCFYPHLLDITSNANNKIKA
LMRIRTILSQEKRDILYFTFIISIFNYCPLIWMFCSKTAHALINKTQYRA
LKARFSNFTESFEKLLVRSNSIKIHDRNIKLILCEVFKSKKKLDPKILHD
IFETKKIPYALSSGDLLEIPNYAYTDFLTFAPQ Run BLAST on NCBI transcript from alignment at sc0006380:248..1964 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044880 ID=TCONS_00044880|Name=TCONS_00044880|organism=Clytia hemisphaerica|type=transcript|length=1717bp|location=Sequence derived from alignment at sc0006380:248..1964 (Clytia hemisphaerica)
CTGACGATAACACTCTTTCGGAGGCAGGAAAAACGCTTGAAATTGTTTAC
ACTATGCTCTccaaaaaaagcaaaactaaTGTTAGATTGGTATGCACAAA
AATCATTGGTGGCAAACTCAGCAAAGTTTCAAGTCATCTTCCCAGGTAGT
CCAAAATGTAATATTTCTCTGATCATTAATGGTAGTATTATTGATAGTTC
TGAAATTGTAAAACTTTTAGGAGTTTTGATTGATGACAAACTCTGTTTTT
ATCCTCATCTATTAGACATTACGTCTAatgcaaacaacaaaattaaagCC
TTAATGAGGATAAGGACTATTTTGTCCCAAGAAAAACGTGACATCTTATA
TTTCACTTTTATTatatcaattttcaattattgTCCACTCATATGGATGT
TTTGTTCTAAAACTGCACATGCATTAATCAATAAAACACAGTACAGAGCC
CTTAAAgcaagattttcaaactttaccgAGTCCTTTGAAAAACTTCTTGT
TAGATCTAATTCGATTAAAATTCATGACCGAAATATTAAACTTATACTTT
GCGAAGttttcaaatctaaaaaaaaactggaccctaaaattttgcatgac
atttttgaaacaaagaaaataccaTATGCTCTAAGTTCAGGAGATTTGCT
TGAAATTCCAAACTATGCTTACACCGATTTTTTGACTTTCGCGCCACAAT
GACTTGGAATGAAATTCCGAGTGTTATCAAAAGCGTCGAAACTCTCttgg
attttaaaaataaactaaaTGAGACTACCATCTCATGTAGATGTAACTAT
TGCAGATGAATCTCCTCTTCTACCCATAATCTAGTGcagtcttttttctt
tcttttttaatatatattatattatatatatcttatagaattttttatac
attttaaTTAGAGTTTGTTGGATTGTATTAGTATTAAGttactatttttt
ataattttccaacgttaaataaatcaaaaatcaaaaaatagagagaccgt
aagataagaatgctaccgttaagtggaactaaaatactgaaaaacgcgcg
caaaattatgagatgtttgcccaccTTCCTTATGCGTgtagctatgaatg
ccatcctcagaagctttaggcttcctccggtggcaataaTATACAAGTAT
TTGAATACAGCTTTGTACAGATTATACTAGCCTGGGAATTcactctcaaa
attttagaaaaaattaaaattacctcaaacatgaaaagttcttaaattat
agagAGATAAGAAAGAATATTCCACCTATGGACGCGTTTAAATATGCTGG
AATTTTTCATAACAGCAATTCCTTGCTGATACGGATGGATAAATAAGATC
TACATCAACCCGTGTCTCACTACCAAAATCTGGCGAGCGAGTGATATTCT
GAGTatgttaaaaactttaaaaaaattgtaaaacaaacttttatttttgg
tgaataaagggaataaattAACGCGGAATTGATTAATGAGAGCGAAcccc
aaaaaaatttactatTTTGCGGAATGAATTAATGCGAATAGTCCCATTTT
AGGGATTGTGCGAAATTAATTAATGCAAAATAGCGTTTCAgataattttt
ctctttttctttactACATTCTAGCAATTATTGGTACTTATTAAATAGTG
TCAAGTGGGTAAAACAGTGCTTCATTTACGCCCTAAAGTCCAGAAAGAGA
ATATTTAGGCTTTACAC Coding sequence (CDS) from alignment at sc0006380:248..1964 >TCONS_00044880 ID=TCONS_00044880|Name=TCONS_00044880|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0006380:248..1964 (Clytia hemisphaerica)
CTGACGATAACACTCTTTCGGAGGCAGGAAAAACGCTTGAAATTGTTTAC
ACTATGCTCTccaaaaaaagcaaaactaaTGTTAGATTGGTATGCACAAA
AATCATTGGTGGCAAACTCAGCAAAGTTTCAAGTCATCTTCCCAGGTAGT
CCAAAATGTAATATTTCTCTGATCATTAATGGTAGTATTATTGATAGTTC
TGAAATTGTAAAACTTTTAGGAGTTTTGATTGATGACAAACTCTGTTTTT
ATCCTCATCTATTAGACATTACGTCTAatgcaaacaacaaaattaaagCC
TTAATGAGGATAAGGACTATTTTGTCCCAAGAAAAACGTGACATCTTATA
TTTCACTTTTATTatatcaattttcaattattgTCCACTCATATGGATGT
TTTGTTCTAAAACTGCACATGCATTAATCAATAAAACACAGTACAGAGCC
CTTAAAgcaagattttcaaactttaccgAGTCCTTTGAAAAACTTCTTGT
TAGATCTAATTCGATTAAAATTCATGACCGAAATATTAAACTTATACTTT
GCGAAGttttcaaatctaaaaaaaaactggaccctaaaattttgcatgac
atttttgaaacaaagaaaataccaTATGCTCTAAGTTCAGGAGATTTGCT
TGAAATTCCAAACTATGCTTACACCGATTTTTTGACTTTCGCGCCACAAT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044880-exon-sc0006380-1491911889:248..1964 | TCONS_00044880-exon-sc0006380-1491911889:248..1964 | Clytia hemisphaerica | exon |
| TCONS_00044880-exon-sc0006380-1510915933:248..1964 | TCONS_00044880-exon-sc0006380-1510915933:248..1964 | Clytia hemisphaerica | exon |
| TCONS_00044880-exon-sc0006380-1575043694:248..1964 | TCONS_00044880-exon-sc0006380-1575043694:248..1964 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006380 | supercontig | sc0006380:248..1964 . |
Blast
The following BLAST results are available for this feature:
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