TCONS_00044885 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044885
Unique NameTCONS_00044885
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044885 ID=TCONS_00044885|Name=TCONS_00044885|organism=Clytia hemisphaerica|type=transcript|length=335bp
ttttcaattgGTTTATATTGTtatacattttgttaaacacacgcaacaac
cttctactcagaatcatgttcgaactcgatactttttttcgggacaccct
gtatttcaCTTTACTTATTTACAGGTTTGAAGAGATGAAACTAGCTATTC
AACATTTGATGTTGATCGCAAGGCGAATCAAATTCTAACGATCACAGCTA
GGAGCAATCGATTTACAAAGCTCTGAAGTTCAATTGGAAATGAACGAAGC
CAAAGATATCAAAGACTTGGCAGCTAAACAACCACATCACAGCTAAATTT
GGACACATTTCAAAGTTCCTGAACACAAATGGCCC
Run BLAST on NCBI

transcript from alignment at sc0006389:2..1863-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044885 ID=TCONS_00044885|Name=TCONS_00044885|organism=Clytia hemisphaerica|type=transcript|length=1862bp|location=Sequence derived from alignment at sc0006389:2..1863- (Clytia hemisphaerica)
TTTTCAATTGGTTTATATTGTTATACATTTTGTTAAACACACGCAACAAC
CTTCTACTCAGAATCATGTTCGAACTCGATACTTTTTTTCGGGACACCCT
GTATTTCACTTTACTTATTTACAGGTTTGAAGAGATGAAACTAGCTATTC
AACATTTGATGTTGATCGCAAGGCGAATCAAATTCTAACGATCACAGCTA
GGTATGCTTATTTTTTCATCTTTTAAACAAAAAAATCAGTTATTAAAACT
ATTTGGCAAAACCATAGAAAGAGTTTACGGCTCAAACCAGCAAACCAAAA
ACTGATCGGTTTTTTCCAAACCAAAACTGATTTTTCTGAATTTTTAGCTA
TTACGGTATCATTTTTTCATAAATTAATTATAAAGTTGTATTTTAATTAA
GTACTACTCGACCTGATGCCTACCACAATTAAAAAAATTATCGATTTCAA
ATCTTTTAACCCACATCCATTATAGTGTCATTTTAGTCCAGGAGCCGCAA
CCGAAAAACTGTCTTTACGGTCATGCAGTGTGTCCGGAAAAAAGCGGGAA
CAGATTTTAATTTGAAAATTATCAAAATTTCTACCAGAATTTAGACCTCC
CCCCCCCATTTTTTTCAAAACAACATTTTAAATACCTTAGGGAAGGGAGT
TGATCATTCTAAACCTCAGTGCGATGATTACTTTTTTTGCTTCGTTTAAA
ATCTGTTCTTCTTTTCATAAGCACACTGTATAAAGCTCAGTCGGGACTGT
AATGTTTGACTTTGGTCTACAATTTTTGTAGGAGCAATCGATTTACAAAG
CTCTGAAGTTCAATTGGAAATGAACGAAGCCAAAGATATCAAAGACTTGG
CAGCTAAACAAGTATGTTGGTCAGCCAGAATTCATTATTTTTCAGTAAAA
TCGCAAATTGCTTTTCGCTAGTATAATTCTTGACATGTACTAACTAGCAC
TATAATTGATAGCAAGTGAATCAATTACCTTTAAAGAGTTTTTATTGGTA
TTACATAATGTCGTTATCGGATGCTCCGTTGCAAACCTTGGAAAATTATG
GTGTATCATTAAAATTCTTAAAGTAATCTTTTAAACTACTCTGATCCTTA
TAATTCTATTTCAGCCTTTAGAAGTTCACGAAACGATAGCAGAATGCATG
ATCTTCGCCAATCATATAAGCTTCTTTAAAATTTTGTAGTTACGCATTTC
TCATGTGGATATTGTATAATGTTTTTAACACTAAACAATTTTCTTTTGAC
TTAGATTTTCTTCTTAGCTGTCATGCTTGGCCATCGCAGGCAAAAAAATT
GAATATCAGAAAAGATATTGTTGCTATTGTTTTTGAAAACCTGTGAAGCT
TCTTGGTCATTGGTCAAGCGCTGGAATTCTATTGTAATGTCACGTGACTT
AGGTAGGATTCCCTACCTAACCACGGCACATTTTCAGCAAAAGTACGCCA
TCTAGCCCTTTGGGTATTATAATTCTGTGTCTCCAACCTAAAATCATAAT
TTTCAAGCTAAAGCAACAGACATATTGTCTGACCCGAAGATTAGTAGAGA
ATCGATAGCTTGAAAATTAAAATAGATCATTGCATAGGAATCAAAATAAG
TCATCAATTTGACTTTAGACAGTCGACTATCTGTTGACCTTTTTTAAATA
TGAAAGAAGACAATACAGAAATTGACCTTCTAACCTTCTAAAAAAAAGTT
TCAGGTTTACTTAACTTGAAAAAGGGATATTTCTAACAAATGGTTCAACC
AAGACTTTCTCTTATACAATATTTTCAATTCTTATATTTTTGTTGATCTC
ACCTTCAGCCACATCACAGCTAAATTTGGACACATTTCAAAGTTCCTGAA
CACAAATGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028485XLOC_028485Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044885-exon-sc0006389-1575043694:1663..1863TCONS_00044885-exon-sc0006389-1575043694:1663..1863Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1575043694:1003..1082TCONS_00044885-exon-sc0006389-1575043694:1003..1082Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1575043694:2..55TCONS_00044885-exon-sc0006389-1575043694:2..55Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1510915933:1663..1863TCONS_00044885-exon-sc0006389-1510915933:1663..1863Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1510915933:1003..1082TCONS_00044885-exon-sc0006389-1510915933:1003..1082Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1510915933:2..55TCONS_00044885-exon-sc0006389-1510915933:2..55Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1491911889:1663..1863TCONS_00044885-exon-sc0006389-1491911889:1663..1863Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1491911889:1003..1082TCONS_00044885-exon-sc0006389-1491911889:1003..1082Clytia hemisphaericaexon
TCONS_00044885-exon-sc0006389-1491911889:2..55TCONS_00044885-exon-sc0006389-1491911889:2..55Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006389supercontigsc0006389:2..1863 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.737186	3.73676	3.67126	3.39072	5.60791	4.80378	9.81961	5.97659	2.47883	1.89029	2.8441	5.04087	3.17961	2.26562	0	3.47085	0	3.62123	0	0	6.0668	4.51385	4.20132	3.73799	6.01728	10.7439	1.8535	0.60938	1.58175	4.42984
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044885 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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