TCONS_00044904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044904
Unique NameTCONS_00044904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044904 ID=TCONS_00044904|Name=TCONS_00044904|organism=Clytia hemisphaerica|type=transcript|length=449bp
TTTTTCCAATCGATAAAATATATTTCTGCAAATATTTATCATTTAAAGAA
GAATTTNTTTCCAATCGATAAAATATATTTCTGCAAATATTTATCATTTA
AAGAAGAATTTCTATATCTAAAAAGGTATAGTAAAACATACTAAAAATAG
AGAATGTTAAAGCTATCGACTCTTCCAGAAAGTTACCGTGCACGGTGGAG
GTTACTTATATTGTCTCCGGGGATtgtgaaaatctacaaaatttatcTTA
TCCGAAGAATAAATTGCTCTGTTTGGGGTGATTTTGAAGTGAAGATCTGT
TGTCCGGGGGTTAAAAGTCACAATATTCAaatcttttctggaaaagcctc
aAAAAGCCATTCATATGGGAGGAAATACCATTCATGATATTCAGGACAac
atgttttctacggaaagaacCCGTTTTTTTGCAAGTAGTGACAATTCCT
Run BLAST on NCBI

transcript from alignment at sc0006428:1..449

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044904 ID=TCONS_00044904|Name=TCONS_00044904|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0006428:1..449 (Clytia hemisphaerica)
AGGAATTGTCACTACTTGCAAAAAAACGGgttctttccgtagaaaacatg
tTGTCCTGAATATCATGAATGGTATTTCCTCCCATATGAATGGCTTTTtg
aggcttttccagaaaagattTGAATATTGTGACTTTTAACCCCCGGACAA
CAGATCTTCACTTCAAAATCACCCCAAACAGAGCAATTTATTCTTCGGAT
AAgataaattttgtagattttcacaATCCCCGGAGACAATATAAGTAACC
TCCACCGTGCACGGTAACTTTCTGGAAGAGTCGATAGCTTTAACATTCTC
TATTTTTAGTATGTTTTACTATACCTTTTTAGATATAGAAATTCTTCTTT
AAATGATAAATATTTGCAGAAATATATTTTATCGATTGGAAANAAATTCT
TCTTTAAATGATAAATATTTGCAGAAATATATTTTATCGATTGGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028502XLOC_028502Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044904-exon-sc0006428-1491911889:1..449TCONS_00044904-exon-sc0006428-1491911889:1..449Clytia hemisphaericaexon
TCONS_00044904-exon-sc0006428-1510915933:1..449TCONS_00044904-exon-sc0006428-1510915933:1..449Clytia hemisphaericaexon
TCONS_00044904-exon-sc0006428-1575043694:1..449TCONS_00044904-exon-sc0006428-1575043694:1..449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006428supercontigsc0006428:1..449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.149201	0	1.0407	0	1.47106	0.348489	3.89717	4.66951	1.57888	1.85426	0	1.57945	0.100022	0.453239	0.455211	0.185269	1.07663	0.350433	0.31428	0.336187	0	0	1.04556	2.09637	0.738949	0.944747	0.649371	0.964186	1.17886	0.690127
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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