TCONS_00044905 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044905
Unique NameTCONS_00044905
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044905 ID=TCONS_00044905|Name=TCONS_00044905|organism=Clytia hemisphaerica|type=transcript|length=399bp
GTTGCCAGGTAACGAGCGTGGAGCAGACACGATGAGCTCTGATCGACAAA
CCAGGTTGGAAGGAGCAGAAATCAACAAAAGTCTCCTCGCCCTCaaaGAA
TGTATTCGTGCTCTTGGGAAGAAAGGCGCTCATCTACCCTTCCGTGCCAG
TAAACTCACTCAGGTTCTTCGCGATTCGTTCATCGGTGAAAATGCCAAGA
CATGTATGATTGCCATGATTTCTCCTGGTTTGAGTTGCGTTGAACACACA
CTAAACACATTGCGCTATGCTGACAGGTTTGCtgtttctttattattttt
gagGATTCCCAAACCTGAGAGCATCTTTGATcgtaatgggctcttccaga
aaatgtccgtacatgggggtggaggatatattgccCGGGGGGTAGCAAA
Run BLAST on NCBI

protein sequence of TCONS_00044905-protein

>TCONS_00044905-protein ID=TCONS_00044905-protein|Name=TCONS_00044905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
LPGNERGADTMSSDRQTRLEGAEINKSLLALKECIRALGKKGAHLPFRAS
KLTQVLRDSFIGENAKTCMIAMISPGLSCVEHTLNTLRYADRFAVSLLFL
RIPKPESIFDRNGLFQKMSVHGGGGYIARGVA
Run BLAST on NCBI

transcript from alignment at sc0006434:1..1888-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044905 ID=TCONS_00044905|Name=TCONS_00044905|organism=Clytia hemisphaerica|type=transcript|length=1888bp|location=Sequence derived from alignment at sc0006434:1..1888- (Clytia hemisphaerica)
GTTGCCAGGTAACGAGCGTGGAGCAGACACGATGAGCTCTGATCGACAAA
CCAGGTTGGAAGGAGCAGAAATCAACAAAAGTCTCCTCGCCCTCAAAGTA
TGATTTTTTTTTAATCCATAGACTGGAACAAATACTCTTTTTTGAAATAC
CAGCGTACCGGTGAGAAACAATCATGCGAATACTGCAATTTTTGTCAAAT
ATCGAAATACCGGTCAATACAATCTCAAAAGCACCACCCCCCCCTAACAG
CGAAGATTAGAAAATGTCTGTTAGCTGATCTTTCATCATACTTCCCTAAC
GGTGATATGATTTGGATGAAAATTACAAACACGTTTAATCAAAACAACGT
TTCGTCTTTACAAACTGAATTGTGTTGTCACCAACAAAATGAATGCTTTT
GTAATGTTTTACACCAGATCTGTATTTTTCTTTTTGCTCTCAATAGGAAT
GTATTCGTGCTCTTGGGAAGAAAGGCGCTCATCTACCCTTCCGTGCCAGT
AAACTCACTCAGGTATGTAGAGAAACTTCTTTCAGTATACAGCCCGGTGG
AAGTTTTCCCTCGGTGGATATAAAAAAAATTATATCGAGATCCCAATGGG
AATAGAAATTGTATTCCTTCCAGCTAAAAAGTTCTAGCGGAGATAGTTTC
GGAGTGAATTTTTTTCCATTGAATTTAAATTGGGGATAAAATTGTAGACT
TTTTTCCACCGAGGACCTAGCGGGTCAGTGACACAAGGGTCTTTCAATCG
GATCGCGTTGGATACAAAGTAATTTCTTATTGAAACTTTTTAAGGAGCGA
CGACCGAGTGTTCAAGGAGCCAACTCATGAAACCAGGGCTTCCCCGTTCG
AATTCCTGCACCTTCTAAAGTTCCGTTCAGTTCATAGATAACCGAGCCGG
CTGGCCGTGGACCCCGTCAAAATAATCAAAAGGCCGTCAATAAGTCTTAA
ATAACTATTTACCTATAACTGAACTAGACGACCATTTCAAAGCTAGGGCA
TTGTATTTTTGGAAGGTGTTGTAGATTCCTAAAAAAATTTTTATAGAGTT
TACCTTTTTTTCTTTGTCTATATTATATAGGTTCTTCGCGATTCGTTCAT
CGGTGAAAATGCCAAGACATGTATGGTGAGTATGTTTCTCTCTAATGTCC
CTTTACTTTGAAAGCAATAAGTAGTAAAGTAAGTTTCCGACTGCAGTCGA
GAGCGAACCAAAGACTACCTTTTCGTATAGCTGTCTACCCGAAGATAGGG
GAGGGTGTCACTCTTTCCCCAGGATTTAGTTGCTTAGCATCAAGCAGATA
GGCAACAAGTACCATTTTGGGAATCTTTGGTATGACCCGGTGGGGGTCGA
ACCCACATCCTTACTCACCGTAGCTGGATGCTCTACCTTCATGCTACGGT
CGCTCTTTGAAAACTTAGAGAGTTTAAAGCCCACGCAATCCATATTCACG
TTACTTTGGACTAGAATAGACCTTATCGGAGTTTTTGATTTTTCTAAAAA
AGCGATGCATTGTGGGATTGTTCCGGGAGTATTACAATAGAATTCCCTCG
GGGAATTCCTAAGAGATTTCTATTGTAATACTCCCGAAACAATCCCACAA
TGCATCGCTTTTGTAGAAAAATACAAAAACTCTAAGATCTATTGGTAGCA
ACTAAGTCAGCCGTTGGATCATTTCTAACCAATATATCCCCTTTTAGATT
GCCATGATTTCTCCTGGTTTGAGTTGCGTTGAACACACACTAAACACATT
GCGCTATGCTGACAGGTTTGCTGTTTCTTTATTATTTTTGAGGATTCCCA
AACCTGAGAGCATCTTTGATCGTAATGGGCTCTTCCAGAAAATGTCCGTA
CATGGGGGTGGAGGATATATTGCCCGGGGGGTAGCAAA

Coding sequence (CDS) from alignment at sc0006434:1..1888-

>TCONS_00044905 ID=TCONS_00044905|Name=TCONS_00044905|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0006434:1..1888- (Clytia hemisphaerica)
ATTGCCATGATTTCTCCTGGTTTGAGTTGCGTTGAACACACACTAAACAC
ATTGCGCTATGCTGACAGGTTTGCTGTTTCTTTATTATTTTTGAGGATTC
CCAAACCTGAGAGCATCTTTGATCGTAATGGGCTCTTCCAGAAAATGTCC
GTACATGGGGGTGGAGGATATATTGCCCGGGGGGTAGCAGTTCTTCGCGA
TTCGTTCATCGGTGAAAATGCCAAGACATGTATGGAATGTATTCGTGCTC
TTGGGAAGAAAGGCGCTCATCTACCCTTCCGTGCCAGTAAACTCACTCAG
TTGCCAGGTAACGAGCGTGGAGCAGACACGATGAGCTCTGATCGACAAAC
CAGGTTGGAAGGAGCAGAAATCAACAAAAGTCTCCTCGCCCTCAAAATTG
CCATGATTTCTCCTGGTTTGAGTTGCGTTGAACACACACTAAACACATTG
CGCTATGCTGACAGGTTTGCTGTTTCTTTATTATTTTTGAGGATTCCCAA
ACCTGAGAGCATCTTTGATCGTAATGGGCTCTTCCAGAAAATGTCCGTAC
ATGGGGGTGGAGGATATATTGCCCGGGGGGTAGCAGTTCTTCGCGATTCG
TTCATCGGTGAAAATGCCAAGACATGTATGGAATGTATTCGTGCTCTTGG
GAAGAAAGGCGCTCATCTACCCTTCCGTGCCAGTAAACTCACTCAGTTGC
CAGGTAACGAGCGTGGAGCAGACACGATGAGCTCTGATCGACAAACCAGG
TTGGAAGGAGCAGAAATCAACAAAAGTCTCCTCGCCCTCAAAATTGCCAT
GATTTCTCCTGGTTTGAGTTGCGTTGAACACACACTAAACACATTGCGCT
ATGCTGACAGGTTTGCTGTTTCTTTATTATTTTTGAGGATTCCCAAACCT
GAGAGCATCTTTGATCGTAATGGGCTCTTCCAGAAAATGTCCGTACATGG
GGGTGGAGGATATATTGCCCGGGGGGTAGCAGTTCTTCGCGATTCGTTCA
TCGGTGAAAATGCCAAGACATGTATGGAATGTATTCGTGCTCTTGGGAAG
AAAGGCGCTCATCTACCCTTCCGTGCCAGTAAACTCACTCAGTTGCCAGG
TAACGAGCGTGGAGCAGACACGATGAGCTCTGATCGACAAACCAGGTTGG
AAGGAGCAGAAATCAACAAAAGTCTCCTCGCCCTCAAAATTGCCATGATT
TCTCCTGGTTTGAGTTGCGTTGAACACACACTAAACACATTGCGCTATGC
TGACAGGTTTGCTGTTTCTTTATTATTTTTGAGGATTCCCAAACCTGAGA
GCATCTTTGATCGTAATGGGCTCTTCCAGAAAATGTCCGTACATGGGGGT
GGAGGATATATTGCCCGGGGGGTAGCAGTTCTTCGCGATTCGTTCATCGG
TGAAAATGCCAAGACATGTATGGAATGTATTCGTGCTCTTGGGAAGAAAG
GCGCTCATCTACCCTTCCGTGCCAGTAAACTCACTCAGTTGCCAGGTAAC
GAGCGTGGAGCAGACACGATGAGCTCTGATCGACAAACCAGGTTGGAAGG
AGCAGAAATCAACAAAAGTCTCCTCGCCCTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028503XLOC_028503Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044905-exon-sc0006434-1575043694:1792..1888TCONS_00044905-exon-sc0006434-1575043694:1792..1888Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1575043694:1377..1442TCONS_00044905-exon-sc0006434-1575043694:1377..1442Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1575043694:764..808TCONS_00044905-exon-sc0006434-1575043694:764..808Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1575043694:1..191TCONS_00044905-exon-sc0006434-1575043694:1..191Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1510915933:1792..1888TCONS_00044905-exon-sc0006434-1510915933:1792..1888Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1510915933:1377..1442TCONS_00044905-exon-sc0006434-1510915933:1377..1442Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1510915933:764..808TCONS_00044905-exon-sc0006434-1510915933:764..808Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1510915933:1..191TCONS_00044905-exon-sc0006434-1510915933:1..191Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1491911889:1792..1888TCONS_00044905-exon-sc0006434-1491911889:1792..1888Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1491911889:1377..1442TCONS_00044905-exon-sc0006434-1491911889:1377..1442Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1491911889:764..808TCONS_00044905-exon-sc0006434-1491911889:764..808Clytia hemisphaericaexon
TCONS_00044905-exon-sc0006434-1491911889:1..191TCONS_00044905-exon-sc0006434-1491911889:1..191Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044905-proteinTCONS_00044905-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006434supercontigsc0006434:1..1888 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.327	21.945	27.6423	28.0949	16.317	10.7677	8.05898	10.682	10.8481	13.9417	17.8822	13.4387	10.3393	13.1443	15.0812	16.3532	15.3013	15.0754	16.2422	14.6433	8.11697	8.65245	11.2336	15.3253	14.3465	8.7587	11.0121	6.93691	8.21553	11.409
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001752Kinesin_motor_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003777microtubule motor activity
GO:0008017microtubule binding
Vocabulary: Biological Process
TermDefinition
GO:0007018microtubule-based movement
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity
Blast
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BLAST of TCONS_00044905 vs. Swiss-Prot (Human)
Match: KIF2C (Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 1.049e-46
Identity = 76/92 (82.61%), Postives = 83/92 (90.22%), Query Frame = 2 
Query:    2 LPGNERGADTMSSDRQTRLEGAEINKSLLALKECIRALGKKGAHLPFRASKLTQVLRDSFIGENAKTCMIAMISPGLSCVEHTLNTLRYADR 277
            L GNERGADT S+DRQTR+EGAEINKSLLALKECIRALG+  AH PFR SKLTQVLRDSFIGEN++TCMIA ISPG+S  E+TLNTLRYADR
Sbjct:  493 LAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADR 584
The following BLAST results are available for this feature:
BLAST of TCONS_00044905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KIF2C1.049e-4682.61Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2... [more]
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