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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044909 ID=TCONS_00044909|Name=TCONS_00044909|organism=Clytia hemisphaerica|type=transcript|length=653bp AAAAAGCCAAACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGAC AAAGCTATCGATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGC AGGTGCGGGCGGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCG GTGGTGCTGCAGgcggtggtggtggtggaggtggtggagctCCTTCTCCC GAAATGGTGAAACTGCAAGCAACTGTTGGTGATTTAGCAGACAAGCTAGA TGCTGTGAATGAGAAAGTTGACGGTGGGGGTGCCGGCATTTTAGGGCCAC TTGCTCCAGGCGCTAAAGCAGGTCCAGTGGGTACCGAGCTAGGCAAGATG GGTGCAGCTATTCAACAGTTGGCATCAGAAGTTGCGGGAATGAAAGAAGC AGAAAAATCCAAGGAAGCTGGTGATATTCCTGGATTTAAGAATGATAAGG CGTTGAACCAAGCCACTAAGATTTTGCTCGCATTGCAAAAGAATCAGAAG CCACCGCTTCAACAAGTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTC CGATCAACCGTCCGTACCACCGGACACTGGTACTGCAGCTGCCATCTTGG CGACTGCTACTGTCAATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAG GTa Run BLAST on NCBI protein sequence of TCONS_00044909-protein >TCONS_00044909-protein ID=TCONS_00044909-protein|Name=TCONS_00044909-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
KAKQTAMVGQTLGKLDKAIDSITTKLTAEAAAAGAGGGGAAGGGGGGGGG GAAGGGGGGGGGAPSPEMVKLQATVGDLADKLDAVNEKVDGGGAGILGPL APGAKAGPVGTELGKMGAAIQQLASEVAGMKEAEKSKEAGDIPGFKNDKA LNQATKILLALQKNQKPPLQQVVEGYSQAMKASDQPSVPPDTGTAAAILA TATVNQALNAIKNAAKV Run BLAST on NCBI transcript from alignment at sc0006446:44..1852- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044909 ID=TCONS_00044909|Name=TCONS_00044909|organism=Clytia hemisphaerica|type=transcript|length=1809bp|location=Sequence derived from alignment at sc0006446:44..1852- (Clytia hemisphaerica) AAAAAGCCAAACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGAC
AAAGCTATCGATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGC
AGGTGCGGGCGGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCG
GTGGTGCTGCAGGTAAACATTTTAGGCTTCGCTATATTTCCCAGCTGGCA
CACAATGTTTTTTCAATGTTTATCTAATGTTCACAACGTCCATATAACGT
TAAATGAACGTTGAAGCAATGTTTTGTGTTAAAACAAGCTTCAAATATAG
CTCCTTCCTACCGAAATATTGTACTCCCACAACAAAACTAGATTATCTTA
ATGATCTGCTACTTTACAGAATATTTTTAGTGTTTTTTAATGTCTTTTTG
GCTTGGATAATAGGATAATACCTATGTGAGTCAGTATTTTAATTGTGGTA
GTGCATCATCAAGGTACGGTGTGCAAGGTGGTGGGCTCTCAAAATGGTAC
TTGATGCCTCTCTGCTTGATGCTCAGCAATTAGGAGAAGGATCAAGGGTA
ATTGGAGTAATCCAGGGAGAAAAGGGTGACGATTGAAAGAGGAGCCTTCG
GGTCGCCACCGACTGTGGTCGTAGACTTGCTTATATACCCACTAAAACCT
ATTTGGTTTAAAGAACTACAAATTGTTTTATCTTGATAGGCGGTGGTGGT
GGTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAAC
TGTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGACG
GTGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGGT
CCAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGGC
ATCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGTG
ATATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGATT
TTGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAGTAAGGCA
TTTTATGATTTCTAAAGGGATAATAAGATTGTGATTTAAAACATAAAGGA
TAGAATAAAATAAATAAGTTTAAAACTTAGGGTTGCAAGCTGACGGGTAT
GTGCCACCCAACTTTCGACCCTCTGACTCTTAGAGGGACTAAAAAGGAGA
AAAAATAGAAAAATTTAGCGATTTTTACGACCATTATCAGGTCTAATTTG
ACCAAATTTTGATCTTTCAAGGAGCAAAAAGAAGAAACCTTCCTATTTTT
CCGACCCTTAGAGGGACTGAAATTTAGGGTTGCACGCTGACGGGTATGTG
CCGCCCGACTTTCGACCTTCGGACCCTTAGAGGGAATAAATAAAAGAATT
TTACGACCCTTATCGGGACTAATTTGACCAAATTTCGATATTTTTAGGGA
CAAAAAAATTGAAATTATCCTATTTTTCCGATCCTTTATGGGAGTGAGAT
TTGATTTTCTGATCTTTCCAACCCTTAGTGGGACTTTGGAGGTCCAAAAA
AGGTACCCTTAAGGACGGCACATACCCGTAGCCTCCATTTGCCTAAGTAT
ACCCCCCGGATGCTTTCACAAGCTCAAATAAAATATCATCAATCTGACAA
ATATTCTTGTGATCTTTACAGGTTGTTGAAGGTTATTCACAAGCAATGAA
AGCGTCCGATCAACCGTCCGTACCACCGGACACTGGTACTGCAGCTGCCA
TCTTGGCGACTGCTACTGTCAATCAAGCTCTAAATGCTATCAAGAACGCG
GCAAAGGTA Coding sequence (CDS) from alignment at sc0006446:44..1852- >TCONS_00044909 ID=TCONS_00044909|Name=TCONS_00044909|organism=Clytia hemisphaerica|type=CDS|length=1953bp|location=Sequence derived from alignment at sc0006446:44..1852- (Clytia hemisphaerica) GTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTCCGATCAACCGTCCGT ACCACCGGACACTGGTACTGCAGCTGCCATCTTGGCGACTGCTACTGTCA ATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAGGTAGCGGTGGTGGTG GTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAACT GTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGACGG TGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGGTC CAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGGCA TCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGTGA TATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGATTT TGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAAAAGCCAAA CAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGACAAAGCTATCGA TTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGCAGGTGCGGGCG GAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCGGTGGTGCTGCA GGTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTCCGATCAACCGTCCG TACCACCGGACACTGGTACTGCAGCTGCCATCTTGGCGACTGCTACTGTC AATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAGGTAGCGGTGGTGGT GGTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAAC TGTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGACG GTGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGGT CCAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGGC ATCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGTG ATATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGATT TTGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAAAAGCCAA ACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGACAAAGCTATCG ATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGCAGGTGCGGGC GGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCGGTGGTGCTGC AGGTTGTTGAAGGTTATTCACAAGCAATGAAAGCGTCCGATCAACCGTCC GTACCACCGGACACTGGTACTGCAGCTGCCATCTTGGCGACTGCTACTGT CAATCAAGCTCTAAATGCTATCAAGAACGCGGCAAAGGTAGCGGTGGTGG TGGTGGAGGTGGTGGAGCTCCTTCTCCCGAAATGGTGAAACTGCAAGCAA CTGTTGGTGATTTAGCAGACAAGCTAGATGCTGTGAATGAGAAAGTTGAC GGTGGGGGTGCCGGCATTTTAGGGCCACTTGCTCCAGGCGCTAAAGCAGG TCCAGTGGGTACCGAGCTAGGCAAGATGGGTGCAGCTATTCAACAGTTGG CATCAGAAGTTGCGGGAATGAAAGAAGCAGAAAAATCCAAGGAAGCTGGT GATATTCCTGGATTTAAGAATGATAAGGCGTTGAACCAAGCCACTAAGAT TTTGCTCGCATTGCAAAAGAATCAGAAGCCACCGCTTCAACAAAAAGCCA AACAAACAGCCATGGTTGGACAGACGCTCGGAAAATTGGACAAAGCTATC GATTCCATTACTACTAAACTAACAGCCGAAGCTGCTGCAGCAGGTGCGGG CGGAGGTGGCGCTGCTGGTGGCGGAGGTGGAGGCGGTGGCGGTGGTGCTG CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00044909-exon-sc0006446-1575043694:1691..1852 | TCONS_00044909-exon-sc0006446-1575043694:1691..1852 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1575043694:811..1163 | TCONS_00044909-exon-sc0006446-1575043694:811..1163 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1575043694:44..181 | TCONS_00044909-exon-sc0006446-1575043694:44..181 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1510915933:1691..1852 | TCONS_00044909-exon-sc0006446-1510915933:1691..1852 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1510915933:811..1163 | TCONS_00044909-exon-sc0006446-1510915933:811..1163 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1510915933:44..181 | TCONS_00044909-exon-sc0006446-1510915933:44..181 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1491911889:1691..1852 | TCONS_00044909-exon-sc0006446-1491911889:1691..1852 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1491911889:811..1163 | TCONS_00044909-exon-sc0006446-1491911889:811..1163 | Clytia hemisphaerica | exon |
TCONS_00044909-exon-sc0006446-1491911889:44..181 | TCONS_00044909-exon-sc0006446-1491911889:44..181 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0006446 | supercontig | sc0006446:44..1852 - |
Blast
The following BLAST results are available for this feature:
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