TCONS_00044910 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044910
Unique NameTCONS_00044910
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044910 ID=TCONS_00044910|Name=TCONS_00044910|organism=Clytia hemisphaerica|type=transcript|length=659bp
GACTGTTAGAATCAAACAAATAACATTTATTCTGGTTGTCTTTCAGAAAT
GCAATACAATAACCTTCAATAAATAGTATAACTCCAGTGacgttttcttt
aaaaaactaattttcatcAAGAAAAGCATCAACATGTACTCTACTACCAT
CTGATAACGTATCTATGTACCCATCGGTTTGTCTGACAATAGTAATATCA
AAACGACAGTTTTCAATCATAATTTGTGCAGGCAATTCATTGATATACAA
TGGTCTATTTATGCCAGTATCTTTAAATACTTTGTCACCCTTGTGTAAGA
TATGGTCTAGATCATAATCTTTCCAGATATTAATTTTGCGAATATTTGTC
CAGCATACCGAAAAAACTGTAATTGCAGCACACTGCTTACCGACAGTATG
TCCAAATATTTCATTGGCTTGATTGAAGTTACCttggattattttttcaa
acctcatgTTGTCCGAATTATTCGTCTTAAATCTACGCTATTCCAATCAC
AAGCACAAGTCAAGTGTGTAGAAAAGTTGTTAAATCAAGGATGGAAAATA
AGTaattaaatccaaaaaaggtaggAATTATTGTTTTTAAACCTTGACTA
GAATTGTACAAagtatatatataatatttttcaaaacaaaaatctctttG
ACTTTGTCG
Run BLAST on NCBI

protein sequence of TCONS_00044910-protein

>TCONS_00044910-protein ID=TCONS_00044910-protein|Name=TCONS_00044910-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MRFEKIIQGNFNQANEIFGHTVGKQCAAITVFSVCWTNIRKINIWKDYDL
DHILHKGDKVFKDTGINRPLYINELPAQIMIENCRFDITIVRQTDGYIDT
LSDGSRVHVDAFLDEN
Run BLAST on NCBI

transcript from alignment at sc0006451:4..662

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044910 ID=TCONS_00044910|Name=TCONS_00044910|organism=Clytia hemisphaerica|type=transcript|length=659bp|location=Sequence derived from alignment at sc0006451:4..662 (Clytia hemisphaerica)
CGACAAAGTCaaagagatttttgttttgaaaaatattatatatatactTT
GTACAATTCTAGTCAAGGTTTAAAAACAATAATTcctaccttttttggat
ttaattACTTATTTTCCATCCTTGATTTAACAACTTTTCTACACACTTGA
CTTGTGCTTGTGATTGGAATAGCGTAGATTTAAGACGAATAATTCGGACA
AcatgaggtttgaaaaaataatccaaGGTAACTTCAATCAAGCCAATGAA
ATATTTGGACATACTGTCGGTAAGCAGTGTGCTGCAATTACAGTTTTTTC
GGTATGCTGGACAAATATTCGCAAAATTAATATCTGGAAAGATTATGATC
TAGACCATATCTTACACAAGGGTGACAAAGTATTTAAAGATACTGGCATA
AATAGACCATTGTATATCAATGAATTGCCTGCACAAATTATGATTGAAAA
CTGTCGTTTTGATATTACTATTGTCAGACAAACCGATGGGTACATAGATA
CGTTATCAGATGGTAGTAGAGTACATGTTGATGCTTTTCTTgatgaaaat
tagttttttaaagaaaacgtCACTGGAGTTATACTATTTATTGAAGGTTA
TTGTATTGCATTTCTGAAAGACAACCAGAATAAATGTTATTTGTTTGATT
CTAACAGTC

Coding sequence (CDS) from alignment at sc0006451:4..662

>TCONS_00044910 ID=TCONS_00044910|Name=TCONS_00044910|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0006451:4..662 (Clytia hemisphaerica)
atgaggtttgaaaaaataatccaaGGTAACTTCAATCAAGCCAATGAAAT
ATTTGGACATACTGTCGGTAAGCAGTGTGCTGCAATTACAGTTTTTTCGG
TATGCTGGACAAATATTCGCAAAATTAATATCTGGAAAGATTATGATCTA
GACCATATCTTACACAAGGGTGACAAAGTATTTAAAGATACTGGCATAAA
TAGACCATTGTATATCAATGAATTGCCTGCACAAATTATGATTGAAAACT
GTCGTTTTGATATTACTATTGTCAGACAAACCGATGGGTACATAGATACG
TTATCAGATGGTAGTAGAGTACATGTTGATGCTTTTCTTgatgaaaatta
g
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028508XLOC_028508Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044910-proteinTCONS_00044910-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044910-exon-sc0006451-1491911889:4..662TCONS_00044910-exon-sc0006451-1491911889:4..662Clytia hemisphaericaexon
TCONS_00044910-exon-sc0006451-1510915933:4..662TCONS_00044910-exon-sc0006451-1510915933:4..662Clytia hemisphaericaexon
TCONS_00044910-exon-sc0006451-1575043694:4..662TCONS_00044910-exon-sc0006451-1575043694:4..662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006451supercontigsc0006451:4..662 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.4405	1.56036	0.624862	1.04874	3.2479	2.64516	4.3036	4.45995	4.68539	3.68084	3.27487	4.16141	4.57179	4.34593	3.93564	4.0334	5.50403	5.5291	4.152	3.9074	9.54377	10.9665	3.85765	5.62983	1.60828	4.15918	5.66915	5.5865	3.47276	2.9037
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006928htUSP_central_domain
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044910 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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