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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044911 ID=TCONS_00044911|Name=TCONS_00044911|organism=Clytia hemisphaerica|type=transcript|length=1188bp
GGGTTAAAGAGTTATGACCCTGGTGACCAAGGAGAAATGAAACGTATGTC
GGATGCTATTGTTGCACGCCCTAAAAGTGCTTCTTCTCTGCCCTCTTCAT
CTACAATAACTCGAAACCCAGAACAAGTGGGACACGTATTTACCAATTGC
ACTGTGACTTTTAATAACATAATTCAAAAAAACGAATCGAGTCGGAAGCG
AAAACGTGTGATTTATAGTAGTGACTCTTCTCAATCGcaataaaatgata
aaagtcagatttttttgtttaaagtcATGAATATTTCTTGGGTTATTGAT
GTATGTTTATTTATAGCAATTACTGTTGTAcgttttttaaaatttgaaat
ttcttgagTTGCCAATTTTAATGATTTAAAGTCTAAAATGTTACAAAAAA
TTGTACTCTATTGCACTTTACGATTATGtcttcttcaattcttttttgac
catataattaacgcggaataacatggtattctcgggtgattttggattaa
taacccctcgtttcattgaaaacatttcaaaatagccctcactacgttcg
ggctattttgaaatgttttcaatgaacctcggggttattaatcccaaatc
accctccaaaccatgttattactagtacaaatatTAATTCAAATTACATA
ATATTACATAATATCATGACATAAAATAATGAGAAGAATTACATAGCATA
GCATACAGGGGCATTATAATAGACAGGCGTACAAATTGTTTCTCCATTTT
CTTCATaacaaacattttcaatgtgctcTTCTACCTCGCATTCTATTTCC
GGGGAAACACGATTTCCACGGTCTAAAGAATTTCGCCCTAAATTGATGAG
ATTTACATCGCATAAATAGAAGTGTTCTGACCAGCAATCTGGGTAAGAAG
GGTAAGCAGTATGATTTAAATTACAAGCATCGTAAGCTTTGCTTTTGCAT
ACATCTTCATTGATTTGTTGTTTCGGGAGCGTGAAAGCATAGCAACATCT
CAGCATCAAAACagaaaacaaatattttaaaactttcttcattttctgct
ttgtttttatttcctGTTGGGATGACCGTGTCGAATGGATTAAAGGAAGA
CAGCTTTGAGCCAATCAAGTTGAAGAGTGTTTTAGAAACGAAAAATGAAC
TCACAAATCCTTCTATTTATTATTGCTATAATATTAGC Run BLAST on NCBI protein sequence of TCONS_00044911-protein >TCONS_00044911-protein ID=TCONS_00044911-protein|Name=TCONS_00044911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MKKVLKYLFSVLMLRCCYAFTLPKQQINEDVCKSKAYDACNLNHTAYPSY
PDCWSEHFYLCDVNLINLGRNSLDRGNRVSPEIECEVEEHIENVCYEENG
ETICTPVYYNAPVCYAM Run BLAST on NCBI transcript from alignment at sc0006452:682..1869 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044911 ID=TCONS_00044911|Name=TCONS_00044911|organism=Clytia hemisphaerica|type=transcript|length=1188bp|location=Sequence derived from alignment at sc0006452:682..1869 (Clytia hemisphaerica)
GCTAATATTATAGCAATAATAAATAGAAGGATTTGTGAGTTCATTTTTCG
TTTCTAAAACACTCTTCAACTTGATTGGCTCAAAGCTGTCTTCCTTTAAT
CCATTCGACACGGTCATCCCAACaggaaataaaaacaaagcagaaaatga
agaaagttttaaaatatttgttttctGTTTTGATGCTGAGATGTTGCTAT
GCTTTCACGCTCCCGAAACAACAAATCAATGAAGATGTATGCAAAAGCAA
AGCTTACGATGCTTGTAATTTAAATCATACTGCTTACCCTTCTTACCCAG
ATTGCTGGTCAGAACACTTCTATTTATGCGATGTAAATCTCATCAATTTA
GGGCGAAATTCTTTAGACCGTGGAAATCGTGTTTCCCCGGAAATAGAATG
CGAGGTAGAAgagcacattgaaaatgtttgttATGAAGAAAATGGAGAAA
CAATTTGTACGCCTGTCTATTATAATGCCCCTGTATGCTATGCTATGTAA
TTCTTCTCATTATTTTATGTCATGATATTATGTAATATTATGTAATTTGA
ATTAatatttgtactagtaataacatggtttggagggtgatttgggatta
ataaccccgaggttcattgaaaacatttcaaaatagcccgaacgtagtga
gggctattttgaaatgttttcaatgaaacgaggggttattaatccaaaat
cacccgagaataccatgttattccgcgttaattatatggtcaaaaaagaa
ttgaagaagaCATAATCGTAAAGTGCAATAGAGTACAATTTTTTGTAACA
TTTTAGACTTTAAATCATTAAAATTGGCAActcaagaaatttcaaatttt
aaaaaacgTACAACAGTAATTGCTATAAATAAACATACATCAATAACCCA
AGAAATATTCATgactttaaacaaaaaaatctgacttttatcattttatt
gCGATTGAGAAGAGTCACTACTATAAATCACACGTTTTCGCTTCCGACTC
GATTCGTTTTTTTGAATTATGTTATTAAAAGTCACAGTGCAATTGGTAAA
TACGTGTCCCACTTGTTCTGGGTTTCGAGTTATTGTAGATGAAGAGGGCA
GAGAAGAAGCACTTTTAGGGCGTGCAACAATAGCATCCGACATACGTTTC
ATTTCTCCTTGGTCACCAGGGTCATAACTCTTTAACCC Coding sequence (CDS) from alignment at sc0006452:682..1869 >TCONS_00044911 ID=TCONS_00044911|Name=TCONS_00044911|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at sc0006452:682..1869 (Clytia hemisphaerica)
atgaagaaagttttaaaatatttgttttctGTTTTGATGCTGAGATGTTG
CTATGCTTTCACGCTCCCGAAACAACAAATCAATGAAGATGTATGCAAAA
GCAAAGCTTACGATGCTTGTAATTTAAATCATACTGCTTACCCTTCTTAC
CCAGATTGCTGGTCAGAACACTTCTATTTATGCGATGTAAATCTCATCAA
TTTAGGGCGAAATTCTTTAGACCGTGGAAATCGTGTTTCCCCGGAAATAG
AATGCGAGGTAGAAgagcacattgaaaatgtttgttATGAAGAAAATGGA
GAAACAATTTGTACGCCTGTCTATTATAATGCCCCTGTATGCTATGCTAT
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044911-exon-sc0006452-1491911889:682..1869 | TCONS_00044911-exon-sc0006452-1491911889:682..1869 | Clytia hemisphaerica | exon |
| TCONS_00044911-exon-sc0006452-1510915933:682..1869 | TCONS_00044911-exon-sc0006452-1510915933:682..1869 | Clytia hemisphaerica | exon |
| TCONS_00044911-exon-sc0006452-1575043694:682..1869 | TCONS_00044911-exon-sc0006452-1575043694:682..1869 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006452 | supercontig | sc0006452:682..1869 . |
Blast
The following BLAST results are available for this feature:
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