TCONS_00044917 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044917
Unique NameTCONS_00044917
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length373

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044917 ID=TCONS_00044917|Name=TCONS_00044917|organism=Clytia hemisphaerica|type=transcript|length=373bp
agaTTTACAAGTCAGATCAATCGCAAGTTGTCAGTCGTATTTTGTATGGA
ATCACGTACGTTGCCTATCCTCTAGGTTCAATGGTGTCTGCAAAACTTGT
GGAGAAACTAAACTTTAATACGAAAAAAATGGTGCTGTTTTTAAACATGT
TTGAGATTTGTGGAAATCTATTGTTTACGCTGTCAATGATACCTTGTGCG
CCTGCTGTAGGTCGATTCTTGGCTGGTCTTGGTGACGCCTTCTACGTTGT
CCTCATGAAAGAGATGCATCAATACACTGAATTATCAAACGAACGTCTAA
CAATCGAATGTTTAGCTGCTTTTGTGCTTGGTGTCATTCTTTCCCCTGGC
ATCAATATTGTGACCACGTTCAT
Run BLAST on NCBI

protein sequence of TCONS_00044917-protein

>TCONS_00044917-protein ID=TCONS_00044917-protein|Name=TCONS_00044917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
IYKSDQSQVVSRILYGITYVAYPLGSMVSAKLVEKLNFNTKKMVLFLNMF
EICGNLLFTLSMIPCAPAVGRFLAGLGDAFYVVLMKEMHQYTELSNERLT
IECLAAFVLGVILSPGINIVTTF
Run BLAST on NCBI

transcript from alignment at sc0006463:1..1202-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044917 ID=TCONS_00044917|Name=TCONS_00044917|organism=Clytia hemisphaerica|type=transcript|length=1202bp|location=Sequence derived from alignment at sc0006463:1..1202- (Clytia hemisphaerica)
AGATTTACAAGTCAGATCAATCGCAAGTTGTCAGTCGTATTTTGTATGGA
ATCACGTACGTTGCCTATCCTCTAGGTTCAATGGTGTCTGCAAAACTTGT
GGAGAAACTAAACTTTAATACGAAAAAAATGGTGCTGTTTTTAAACATGT
TTGAGATTTGTGGAAATCTATTGTTTACGCTGTCAATGATACCTTGTGCG
CCTGCTGTAGGTAAGTTCATTGAGTTAAAGTCCTGAATGGCGACCGTAGC
ATGAAGGTAGAGCATCCAGCTACAGTGCGCAAGGTTGTGGGTTCGATCCC
CAGCCGGGTCATACCAAAAATCCCGAAAATGGTACTTGACTTGATGCCTC
TCTGCTTGATGCTCAGCAACTAAAGAGACGGATCAAGGGTAAGTGGAGAA
ATCCAAGGAAAGGAGTGGCGCCCTCCCCTACCTTTGGGTAGACAGCTATA
CAAAAAGGGAGCCTTCAGGTCGTCCTCGACTGCGGTCGCAAACTTACTTA
CTTGCTTATTAAAAAGTCCTGAAAGGTCTAAAGATGAAGCTCTTATTTCA
CGGTTTTTCATTCCCTCTTAAATCCTAAAATGTGCAAAGTGAAATTTAAG
AAATCGCTTGATTCAATCTATCATTCTGAATGTGGGACAAATCTTAAGGC
TCAAATTTAAAAGCTTTACCACTCTAGCCCTTTGGGCTTATAACTGAATG
GGTAAATGGGTAAATAGTCTCAAAGCTTACACACAATTCTGTTTCAATTA
CATTCGCCACATCCTTTTAACTCAGAGTGTAGTGTGAAAAGAATGGATGA
TCTGATAAGAGATTAAAGGGACATTAAAGTACTGACGAAATTTGTAAACA
AACCGTATGCAGCGGAATACAAAATCAAAACAAATATGGCTGATTTTGAT
TGTTTCAATTCTTTACAAGTTTCTTTTGGACACGCGATTTTAATTGTTCT
CTTTAATGACACGTGGTTCGCGCAGTGTTTACATTTTAATACTTTTATGT
CCCTTTAACCTTAAACCTCATTGTTTCTTATAACTTTAGGTCGATTCTTG
GCTGGTCTTGGTGACGCCTTCTACGTTGTCCTCATGAAAGAGATGCATCA
ATACACTGAATTATCAAACGAACGTCTAACAATCGAATGTTTAGCTGCTT
TTGTGCTTGGTGTCATTCTTTCCCCTGGCATCAATATTGTGACCACGTTC
AT

Coding sequence (CDS) from alignment at sc0006463:1..1202-

>TCONS_00044917 ID=TCONS_00044917|Name=TCONS_00044917|organism=Clytia hemisphaerica|type=CDS|length=738bp|location=Sequence derived from alignment at sc0006463:1..1202- (Clytia hemisphaerica)
GTCGATTCTTGGCTGGTCTTGGTGACGCCTTCTACGTTGTCCTCATGAAA
GAGATGCATCAATACACTGAATTATCAAACGAACGTCTAACAATCGAATG
TTTAGCTGCTTTTGTGCTTGGTGTCATTCTTTCCCCTGGCATCAATATTG
TGACCACGTTCATTTACAAGTCAGATCAATCGCAAGTTGTCAGTCGTATT
TTGTATGGAATCACGTACGTTGCCTATCCTCTAGGTTCAATGGTGTCTGC
AAAACTTGTGGAGAAACTAAACTTTAATACGAAAAAAATGGTGCTGTTTT
TAAACATGTTTGAGATTTGTGGAAATCTATTGTTTACGCTGTCAATGATA
CCTTGTGCGCCTGCTGTAGGTCGATTCTTGGCTGGTCTTGGTGACGCCTT
CTACGTTGTCCTCATGAAAGAGATGCATCAATACACTGAATTATCAAACG
AACGTCTAACAATCGAATGTTTAGCTGCTTTTGTGCTTGGTGTCATTCTT
TCCCCTGGCATCAATATTGTGACCACGTTCATTTACAAGTCAGATCAATC
GCAAGTTGTCAGTCGTATTTTGTATGGAATCACGTACGTTGCCTATCCTC
TAGGTTCAATGGTGTCTGCAAAACTTGTGGAGAAACTAAACTTTAATACG
AAAAAAATGGTGCTGTTTTTAAACATGTTTGAGATTTGTGGAAATCTATT
GTTTACGCTGTCAATGATACCTTGTGCGCCTGCTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028515XLOC_028515Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044917-proteinTCONS_00044917-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044917-exon-sc0006463-1575043694:993..1202TCONS_00044917-exon-sc0006463-1575043694:993..1202Clytia hemisphaericaexon
TCONS_00044917-exon-sc0006463-1575043694:1..163TCONS_00044917-exon-sc0006463-1575043694:1..163Clytia hemisphaericaexon
TCONS_00044917-exon-sc0006463-1510915933:993..1202TCONS_00044917-exon-sc0006463-1510915933:993..1202Clytia hemisphaericaexon
TCONS_00044917-exon-sc0006463-1510915933:1..163TCONS_00044917-exon-sc0006463-1510915933:1..163Clytia hemisphaericaexon
TCONS_00044917-exon-sc0006463-1491911889:993..1202TCONS_00044917-exon-sc0006463-1491911889:993..1202Clytia hemisphaericaexon
TCONS_00044917-exon-sc0006463-1491911889:1..163TCONS_00044917-exon-sc0006463-1491911889:1..163Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006463supercontigsc0006463:1..1202 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.7841	15.8116	6.27534	4.81775	26.3184	16.5901	18.9052	14.6813	22.9619	19.8365	13.3209	16.1654	9.06016	13.4517	6.12534	5.96052	8.38816	9.50196	7.82972	7.92386	15.8348	10.1235	15.4702	17.1721	1.96562	3.13574	10.6445	12.4928	8.06575	9.91933
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027378Nucleotide_channel_N
IPR020846MFS_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044917 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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