TCONS_00044921 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044921
Unique NameTCONS_00044921
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044921 ID=TCONS_00044921|Name=TCONS_00044921|organism=Clytia hemisphaerica|type=transcript|length=449bp
tAACCCAAGATGAGATTTTCGCACTCGGTTAGCAAGGCGCGGGATATCGA
GTCAAAAATCTCAGAATCAAAACATTGCAAATGGCGGACAAAATTCTGCT
AGAGTGTCTTCATAAAAAAGTACATTTCTTTTGGAAACAACATATCATTA
CCTTTCGATATGGGATTGGATATTTATGTGAATCGAATCAGCAATAGATA
TTGGACTTTTTTACCAAGTTTGAGAGTATATTTCGATGGGATTGTCAAGA
TATTGCTGGATATACATTAGAAAGTCAAATTTGATGTAATGAGCTAGAAT
GATGCAAAGTTGGAAATCTCAATTTTTGTATCTTATCTTTATTTCCTTTT
ATGAATCAATCTACCACTTATTATTTACAGTTAGCAATATTGAGAAAAAC
caaatctaaaatgaaagataaaaatatttggatgGCTCTCAGTTCAGAC
Run BLAST on NCBI

transcript from alignment at sc0006474:1..449

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044921 ID=TCONS_00044921|Name=TCONS_00044921|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at sc0006474:1..449 (Clytia hemisphaerica)
GTCTGAACTGAGAGCcatccaaatatttttatctttcattttagatttgG
TTTTTCTCAATATTGCTAACTGTAAATAATAAGTGGTAGATTGATTCATA
AAAGGAAATAAAGATAAGATACAAAAATTGAGATTTCCAACTTTGCATCA
TTCTAGCTCATTACATCAAATTTGACTTTCTAATGTATATCCAGCAATAT
CTTGACAATCCCATCGAAATATACTCTCAAACTTGGTAAAAAAGTCCAAT
ATCTATTGCTGATTCGATTCACATAAATATCCAATCCCATATCGAAAGGT
AATGATATGTTGTTTCCAAAAGAAATGTACTTTTTTATGAAGACACTCTA
GCAGAATTTTGTCCGCCATTTGCAATGTTTTGATTCTGAGATTTTTGACT
CGATATCCCGCGCCTTGCTAACCGAGTGCGAAAATCTCATCTTGGGTTa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028519XLOC_028519Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044921-exon-sc0006474-1491911889:1..449TCONS_00044921-exon-sc0006474-1491911889:1..449Clytia hemisphaericaexon
TCONS_00044921-exon-sc0006474-1510915933:1..449TCONS_00044921-exon-sc0006474-1510915933:1..449Clytia hemisphaericaexon
TCONS_00044921-exon-sc0006474-1575043694:1..449TCONS_00044921-exon-sc0006474-1575043694:1..449Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006474supercontigsc0006474:1..449 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.264847	0	0	0	0.824435	0.169596	0.190051	0.185599	0.124568	0	0.299531	0.100769	0.294939	0.117699	0.0890547	0.450399	0	0	0.62856	0	0.94782	0.267964	0.293568	1.22876	0.158712	0.752078	1.89516	0.266355	0.875519	0.953909
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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