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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044930 ID=TCONS_00044930|Name=TCONS_00044930|organism=Clytia hemisphaerica|type=transcript|length=696bp
GGTCAATTTGTTCCCATCAATGCATACCAAGTCAAATCGTCAAAACAAAC
TCatggaacaaaacaaaaactcgGCTTCTTCGGGCCGATGTCTTTCAAGA
AGGGTCCATGGCATacactttcaaaacaagatCCTTCAAAGACAAATTTT
AAACGTACAACACCTCATAAAGTAAATAAAAGCAGTACCAAAAACACTAA
ACGTTACGGCGTGCCGTACGCCGGTGTTGGATATCCGTATTATAATTACA
ATAATAATTTATACGGCAGGAGTTTGACGCCTTACCAAGGATATTACGAC
ACTATGATGTCCAACCAAAAAGGCTACTTTAACaattataaaaaagactt
tgttCATAACCAATATTTCATGAGTCCGAATGAACCCGTTTATGAATATT
CGGTAAAGCCATCCCGAAATCAGAATCCGAAATCAAGATCGGATGCTCTA
CATTATCGGACGCTTTCGGGATATGGGTATTTGAATAATGAGGAGTTATT
GGCACGTAGTAAAAACAAAGAAGGTCGATTGGCTAGCAGAAGTTGGCAGA
AGCCGTGGTCGTTGGTACGGCCGTTGGAAATCAAAAAACACGTGCAACGA
ATGGAGTTGGAAAAACATGGAGATGATTATCCTGATGAAGGCTCCAACAC
GCGACCAGACTTAATGTTACCACGAATGGAAGAGCGAGATCCTTAC Run BLAST on NCBI protein sequence of TCONS_00044930-protein >TCONS_00044930-protein ID=TCONS_00044930-protein|Name=TCONS_00044930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
GQFVPINAYQVKSSKQTHGTKQKLGFFGPMSFKKGPWHTLSKQDPSKTNF
KRTTPHKVNKSSTKNTKRYGVPYAGVGYPYYNYNNNLYGRSLTPYQGYYD
TMMSNQKGYFNNYKKDFVHNQYFMSPNEPVYEYSVKPSRNQNPKSRSDAL
HYRTLSGYGYLNNEELLARSKNKEGRLASRSWQKPWSLVRPLEIKKHVQR
MELEKHGDDYPDEGSNTRPDLMLPRMEERDPY Run BLAST on NCBI transcript from alignment at sc0006481:6..1151- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044930 ID=TCONS_00044930|Name=TCONS_00044930|organism=Clytia hemisphaerica|type=transcript|length=1146bp|location=Sequence derived from alignment at sc0006481:6..1151- (Clytia hemisphaerica)
GGTCAATTTGTTCCCATCAATGCATACCAAGTCAAATCGTCAAAACAAAC
TCATGGAACAAAACAAAAACTCGGCTTCTTCGGGCCGATGTCTTTCAAGA
AGGGTCCATGGCATACACTTTCAAAACAAGATCCTTCAAAGACAAATTTT
AAACGTACAACACCTCATAAAGTAAATAAAAGCAGTACCAAAAACACTAA
ACGTTACGGCGTGCCGTACGCCGGTGTTGGATATCCGTATTATAATTACA
ATAATAATTTATACGGCAGGAGTTTGACGCCTTACCAAGGATATTACGAC
ACTATGATGTCCAACCAAAAAGGCTACTTTAACAATTATAAAAAAGACTT
TGTTCATAACCAATATTTCATGAGTCCGAATGAACCCGTTTATGAATATT
CGGTAAAGCCATCCCGAAATCAGAATCCGAAATCAAGATCGGATGCTCTA
CATTATCGGACGCTTTCGGGATATGGGTATTTGAATAATGAGGAGTTATT
GGCACGTAGTAAAAACAAAGAAGGTCGATTGGCTAGCAGAAGTTGGCAGA
AGCCGTGGTCGTTGGTACGGCCGTTGGAAATCAAAAAACACGTGCAACGA
ATGGAGTTGGAAAAACATGGAGATGATTATCCTGATGGTATGTCTGTCTT
TTTAAAGTGTAAAAACATCGCTGTCTCAATGCTTCAAAAATTTCAAGTTC
CCCTGTATAAAGGATATAAATGCATAATTGAAATTTTTCGATCTCCCCTG
TGTCACTGTATGTTTTAAATTAAAAAAGGACAACTGTACCACCCATACGA
ATTCATTCCTCTTTGTTTATCACAAGAACTAACTACATGTGGTTTAAAAG
AATGACAAATAACGCATGTGTGTTATTAATGCAGGAATTGCAAGACGAAC
CTACTGCATTTCATAATTCTAATCTTTCAAGCTCCTGTGTCTCAATGTAC
GACTGTGATTTTTCAAGCTACTCCCCTGTCTCAATTTATGATTATAAATC
TTTCACTGTCTTAATGATTCAAATCTTCTTACAAAACATGTTGAGAGTCA
CTAATCTTACGTTAAATGTTACAAATTCATTTTTCAGAAGGCTCCAACAC
GCGACCAGACTTAATGTTACCACGAATGGAAGAGCGAGATCCTTAC Coding sequence (CDS) from alignment at sc0006481:6..1151- >TCONS_00044930 ID=TCONS_00044930|Name=TCONS_00044930|organism=Clytia hemisphaerica|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0006481:6..1151- (Clytia hemisphaerica)
AAGGCTCCAACACGCGACCAGACTTAATGTTACCACGAATGGAAGAGCGA
GATCCTTACGGTCAATTTGTTCCCATCAATGCATACCAAGTCAAATCGTC
AAAACAAACTCATGGAACAAAACAAAAACTCGGCTTCTTCGGGCCGATGT
CTTTCAAGAAGGGTCCATGGCATACACTTTCAAAACAAGATCCTTCAAAG
ACAAATTTTAAACGTACAACACCTCATAAAGTAAATAAAAGCAGTACCAA
AAACACTAAACGTTACGGCGTGCCGTACGCCGGTGTTGGATATCCGTATT
ATAATTACAATAATAATTTATACGGCAGGAGTTTGACGCCTTACCAAGGA
TATTACGACACTATGATGTCCAACCAAAAAGGCTACTTTAACAATTATAA
AAAAGACTTTGTTCATAACCAATATTTCATGAGTCCGAATGAACCCGTTT
ATGAATATTCGGTAAAGCCATCCCGAAATCAGAATCCGAAATCAAGATCG
GATGCTCTACATTATCGGACGCTTTCGGGATATGGGTATTTGAATAATGA
GGAGTTATTGGCACGTAGTAAAAACAAAGAAGGTCGATTGGCTAGCAGAA
GTTGGCAGAAGCCGTGGTCGTTGGTACGGCCGTTGGAAATCAAAAAACAC
GTGCAACGAATGGAGTTGGAAAAACATGGAGATGATTATCCTGATGAAGG
CTCCAACACGCGACCAGACTTAATGTTACCACGAATGGAAGAGCGAGATC
CTTACGGTCAATTTGTTCCCATCAATGCATACCAAGTCAAATCGTCAAAA
CAAACTCATGGAACAAAACAAAAACTCGGCTTCTTCGGGCCGATGTCTTT
CAAGAAGGGTCCATGGCATACACTTTCAAAACAAGATCCTTCAAAGACAA
ATTTTAAACGTACAACACCTCATAAAGTAAATAAAAGCAGTACCAAAAAC
ACTAAACGTTACGGCGTGCCGTACGCCGGTGTTGGATATCCGTATTATAA
TTACAATAATAATTTATACGGCAGGAGTTTGACGCCTTACCAAGGATATT
ACGACACTATGATGTCCAACCAAAAAGGCTACTTTAACAATTATAAAAAA
GACTTTGTTCATAACCAATATTTCATGAGTCCGAATGAACCCGTTTATGA
ATATTCGGTAAAGCCATCCCGAAATCAGAATCCGAAATCAAGATCGGATG
CTCTACATTATCGGACGCTTTCGGGATATGGGTATTTGAATAATGAGGAG
TTATTGGCACGTAGTAAAAACAAAGAAGGTCGATTGGCTAGCAGAAGTTG
GCAGAAGCCGTGGTCGTTGGTACGGCCGTTGGAAATCAAAAAACACGTGC
AACGAATGGAGTTGGAAAAACATGGAGATGATTATCCTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044930-exon-sc0006481-1575043694:515..1151 | TCONS_00044930-exon-sc0006481-1575043694:515..1151 | Clytia hemisphaerica | exon |
| TCONS_00044930-exon-sc0006481-1575043694:6..64 | TCONS_00044930-exon-sc0006481-1575043694:6..64 | Clytia hemisphaerica | exon |
| TCONS_00044930-exon-sc0006481-1510915933:515..1151 | TCONS_00044930-exon-sc0006481-1510915933:515..1151 | Clytia hemisphaerica | exon |
| TCONS_00044930-exon-sc0006481-1510915933:6..64 | TCONS_00044930-exon-sc0006481-1510915933:6..64 | Clytia hemisphaerica | exon |
| TCONS_00044930-exon-sc0006481-1491911889:515..1151 | TCONS_00044930-exon-sc0006481-1491911889:515..1151 | Clytia hemisphaerica | exon |
| TCONS_00044930-exon-sc0006481-1491911889:6..64 | TCONS_00044930-exon-sc0006481-1491911889:6..64 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0006481 | supercontig | sc0006481:6..1151 - |
Blast
The following BLAST results are available for this feature:
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