TCONS_00044935 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044935
Unique NameTCONS_00044935
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044935 ID=TCONS_00044935|Name=TCONS_00044935|organism=Clytia hemisphaerica|type=transcript|length=311bp
CTAAGATGTACAAAGGCCTTACAGGATGTTTGGAATGGTGGGAGATGGCT
GGGGCCAGAAAGAAAGGGGAATACCCCCTTGAAGACGGCAGCATGAGATG
gtgtttcaatttcaaatcaTGCCAACAAGTTTATGACAGAAGTTATTTAC
AATCTGGAGAAGGCTGGTACAAAATCAACGTTGAAGGAGTGATGATTCGA
CAATTATGTAAAATCTACGATGAGAAAGGATGGAcagtttttcagaaaag
attaaaTCCGCTCAAatatcaatttcataaaaaaacttgGCAGCAATACA
CAGACGGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00044935-protein

>TCONS_00044935-protein ID=TCONS_00044935-protein|Name=TCONS_00044935-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
KMYKGLTGCLEWWEMAGARKKGEYPLEDGSMRWCFNFKSCQQVYDRSYLQ
SGEGWYKINVEGVMIRQLCKIYDEKGWTVFQKRLNPLKYQFHKKTWQQYT
DGN
Run BLAST on NCBI

transcript from alignment at sc0006491:1..464+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044935 ID=TCONS_00044935|Name=TCONS_00044935|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at sc0006491:1..464+ (Clytia hemisphaerica)
CTAAGATGTACAAAGGCCTTACAGGATGTTTGGAATGGTGGGAGATGGCT
GGGGCCAGAAAGAAAGGGGAATACCCCCTTGAAGACGGCAGCATGAGATG
gtgtttcaatttcaaatcaTGCCAACAAGTTTATGACAGAAGTTATTTAC
AATCTGGAGAAGGCTGGTACAAAATCAACGTTGAAGGTCAgactttttta
atgttttgctATCTATACAGAATTGAGCAATCATTCGCTATTAATAAATT
CTATTGCATTTTAAATGATTTCATTTACGGTTCTATACTTTTACAGGCGG
gtaggaaacaaaaatattattctCGCATTTTTCTTGCAGGAGTGATGATT
CGACAATTATGTAAAATCTACGATGAGAAAGGATGGAcagtttttcagaa
aagattaaaTCCGCTCAAatatcaatttcataaaaaaacttgGCAGCAAT
ACACAGACGGTAAT

Coding sequence (CDS) from alignment at sc0006491:1..464+

>TCONS_00044935 ID=TCONS_00044935|Name=TCONS_00044935|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at sc0006491:1..464+ (Clytia hemisphaerica)
AAGATGTACAAAGGCCTTACAGGATGTTTGGAATGGTGGGAGATGGCTGG
GGCCAGAAAGAAAGGGGAATACCCCCTTGAAGACGGCAGCATGAGATGgt
gtttcaatttcaaatcaTGCCAACAAGTTTATGACAGAAGTTATTTACAA
TCTGGAGAAGGCTGGTACAAAATCAACGTTGAAGGAGTGATGATTCGACA
ATTATGTAAAATCTACGATGAGAAAGGATGGAcagtttttcagaaaagat
taaaTCCGCTCAAatatcaatttcataaaaaaacttgGCAGCAATACACA
GACGGTAATAAGATGTACAAAGGCCTTACAGGATGTTTGGAATGGTGGGA
GATGGCTGGGGCCAGAAAGAAAGGGGAATACCCCCTTGAAGACGGCAGCA
TGAGATGgtgtttcaatttcaaatcaTGCCAACAAGTTTATGACAGAAGT
TATTTACAATCTGGAGAAGGCTGGTACAAAATCAACGTTGAAGGAGTGAT
GATTCGACAATTATGTAAAATCTACGATGAGAAAGGATGGAcagtttttc
agaaaagattaaaTCCGCTCAAatatcaatttcataaaaaaacttgGCAG
CAATACACAGACGGTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028530XLOC_028530Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044935-proteinTCONS_00044935-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044935-exon-sc0006491-1491911889:1..186TCONS_00044935-exon-sc0006491-1491911889:1..186Clytia hemisphaericaexon
TCONS_00044935-exon-sc0006491-1510915933:1..186TCONS_00044935-exon-sc0006491-1510915933:1..186Clytia hemisphaericaexon
TCONS_00044935-exon-sc0006491-1575043694:1..186TCONS_00044935-exon-sc0006491-1575043694:1..186Clytia hemisphaericaexon
TCONS_00044935-exon-sc0006491-1491911889:340..464TCONS_00044935-exon-sc0006491-1491911889:340..464Clytia hemisphaericaexon
TCONS_00044935-exon-sc0006491-1510915933:340..464TCONS_00044935-exon-sc0006491-1510915933:340..464Clytia hemisphaericaexon
TCONS_00044935-exon-sc0006491-1575043694:340..464TCONS_00044935-exon-sc0006491-1575043694:340..464Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006491supercontigsc0006491:1..464 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.347688	0.678101	0	0	0.468876	0	0	0.836966	0	0	0	0	0	0	0	0	3.13209	3.30912	0.3696	0	5.5902	3.63303	0.398652	0	0	0	0	0	0	0.393177
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014716Fibrinogen_a/b/g_C_1
IPR002181Fibrinogen_a/b/g_C_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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